Hb_002750_020

Information

Type -
Description -
Location Contig2750: 7028-9832
Sequence    

Annotation

kegg
ID rcu:RCOM_0550920
description tRNA-dihydrouridine synthase, putative
nr
ID XP_012079293.1
description PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
swissprot
ID Q9HGN6
description tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1
trembl
ID A0A067KAE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12444 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002750_020 0.0 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
2 Hb_151978_010 0.2597284128 - - -
3 Hb_168418_010 0.2839894645 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_010098_070 0.2984883623 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001053_160 0.3092073015 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
6 Hb_039635_010 0.312489732 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_004223_200 0.3138569404 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
8 Hb_010589_110 0.3172145036 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
9 Hb_010588_010 0.319807997 - - -
10 Hb_000029_270 0.3236731019 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
11 Hb_004968_060 0.3258020292 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000127_020 0.3263430425 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
13 Hb_002505_050 0.3277464218 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
14 Hb_002235_220 0.3289221441 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
15 Hb_000487_320 0.3326845858 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
16 Hb_010803_010 0.3389591858 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_175445_010 0.3405637459 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
18 Hb_002641_110 0.3408937159 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
19 Hb_000340_440 0.3416121462 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
20 Hb_143629_220 0.34168623 - - PREDICTED: hydrophobic protein LTI6B [Phoenix dactylifera]

Gene co-expression network

sample Hb_002750_020 Hb_002750_020 Hb_151978_010 Hb_151978_010 Hb_002750_020--Hb_151978_010 Hb_168418_010 Hb_168418_010 Hb_002750_020--Hb_168418_010 Hb_010098_070 Hb_010098_070 Hb_002750_020--Hb_010098_070 Hb_001053_160 Hb_001053_160 Hb_002750_020--Hb_001053_160 Hb_039635_010 Hb_039635_010 Hb_002750_020--Hb_039635_010 Hb_004223_200 Hb_004223_200 Hb_002750_020--Hb_004223_200 Hb_151978_010--Hb_039635_010 Hb_000227_030 Hb_000227_030 Hb_151978_010--Hb_000227_030 Hb_002641_110 Hb_002641_110 Hb_151978_010--Hb_002641_110 Hb_010803_010 Hb_010803_010 Hb_151978_010--Hb_010803_010 Hb_151978_010--Hb_168418_010 Hb_031862_050 Hb_031862_050 Hb_168418_010--Hb_031862_050 Hb_010588_010 Hb_010588_010 Hb_168418_010--Hb_010588_010 Hb_113733_010 Hb_113733_010 Hb_168418_010--Hb_113733_010 Hb_029162_020 Hb_029162_020 Hb_168418_010--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_168418_010--Hb_048610_010 Hb_000127_020 Hb_000127_020 Hb_010098_070--Hb_000127_020 Hb_002477_230 Hb_002477_230 Hb_010098_070--Hb_002477_230 Hb_007810_050 Hb_007810_050 Hb_010098_070--Hb_007810_050 Hb_175445_010 Hb_175445_010 Hb_010098_070--Hb_175445_010 Hb_003073_140 Hb_003073_140 Hb_010098_070--Hb_003073_140 Hb_007849_030 Hb_007849_030 Hb_010098_070--Hb_007849_030 Hb_003638_080 Hb_003638_080 Hb_001053_160--Hb_003638_080 Hb_005224_050 Hb_005224_050 Hb_001053_160--Hb_005224_050 Hb_000487_320 Hb_000487_320 Hb_001053_160--Hb_000487_320 Hb_005496_030 Hb_005496_030 Hb_001053_160--Hb_005496_030 Hb_000134_020 Hb_000134_020 Hb_001053_160--Hb_000134_020 Hb_003058_220 Hb_003058_220 Hb_001053_160--Hb_003058_220 Hb_039635_010--Hb_000227_030 Hb_179763_020 Hb_179763_020 Hb_039635_010--Hb_179763_020 Hb_036285_010 Hb_036285_010 Hb_039635_010--Hb_036285_010 Hb_039635_010--Hb_002641_110 Hb_004968_060 Hb_004968_060 Hb_004223_200--Hb_004968_060 Hb_008725_200 Hb_008725_200 Hb_004223_200--Hb_008725_200 Hb_002200_120 Hb_002200_120 Hb_004223_200--Hb_002200_120 Hb_000300_010 Hb_000300_010 Hb_004223_200--Hb_000300_010 Hb_000563_530 Hb_000563_530 Hb_004223_200--Hb_000563_530 Hb_017711_010 Hb_017711_010 Hb_004223_200--Hb_017711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299882 0.0144499 0.0129868 0 0 0.197087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0397384 0.468888 0.0582017 0.0125181 0

CAGE analysis