Hb_002750_040

Information

Type -
Description -
Location Contig2750: 24968-29049
Sequence    

Annotation

kegg
ID rcu:RCOM_0550790
description receptor protein kinase, putative
nr
ID XP_012079291.1
description PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
swissprot
ID Q93Y06
description Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1
trembl
ID A0A067KI81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12441 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at5g67200

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28815: 25757-29039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002750_040 0.0 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
2 Hb_026198_020 0.082575296 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
3 Hb_113766_010 0.1071830023 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
4 Hb_001404_070 0.1079640255 - - sucrose synthase 4 [Hevea brasiliensis]
5 Hb_009122_010 0.1122543811 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_002391_240 0.1128509479 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001269_580 0.1131452026 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
8 Hb_005545_110 0.1176111643 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
9 Hb_002495_030 0.1222811363 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
10 Hb_000392_490 0.1230466142 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
11 Hb_002374_510 0.1237866261 - - Esterase precursor, putative [Ricinus communis]
12 Hb_002890_110 0.1283280423 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
13 Hb_006992_010 0.1297644882 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_000103_300 0.1299339415 - - PREDICTED: perakine reductase-like [Jatropha curcas]
15 Hb_003052_080 0.132050506 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
16 Hb_000309_070 0.1327941497 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
17 Hb_000152_570 0.1347675903 - - 21 kDa protein precursor, putative [Ricinus communis]
18 Hb_141194_020 0.1381604514 - - carbohydrate transporter, putative [Ricinus communis]
19 Hb_090390_010 0.1390981129 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
20 Hb_007370_010 0.1403067411 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]

Gene co-expression network

sample Hb_002750_040 Hb_002750_040 Hb_026198_020 Hb_026198_020 Hb_002750_040--Hb_026198_020 Hb_113766_010 Hb_113766_010 Hb_002750_040--Hb_113766_010 Hb_001404_070 Hb_001404_070 Hb_002750_040--Hb_001404_070 Hb_009122_010 Hb_009122_010 Hb_002750_040--Hb_009122_010 Hb_002391_240 Hb_002391_240 Hb_002750_040--Hb_002391_240 Hb_001269_580 Hb_001269_580 Hb_002750_040--Hb_001269_580 Hb_026198_020--Hb_113766_010 Hb_026198_020--Hb_002391_240 Hb_090390_010 Hb_090390_010 Hb_026198_020--Hb_090390_010 Hb_000392_490 Hb_000392_490 Hb_026198_020--Hb_000392_490 Hb_006992_010 Hb_006992_010 Hb_026198_020--Hb_006992_010 Hb_000103_300 Hb_000103_300 Hb_113766_010--Hb_000103_300 Hb_113766_010--Hb_002391_240 Hb_000152_570 Hb_000152_570 Hb_113766_010--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_113766_010--Hb_002284_060 Hb_000959_130 Hb_000959_130 Hb_001404_070--Hb_000959_130 Hb_005545_110 Hb_005545_110 Hb_001404_070--Hb_005545_110 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_002374_510 Hb_002374_510 Hb_009122_010--Hb_002374_510 Hb_009122_010--Hb_001269_580 Hb_001410_080 Hb_001410_080 Hb_009122_010--Hb_001410_080 Hb_008304_050 Hb_008304_050 Hb_009122_010--Hb_008304_050 Hb_009122_010--Hb_113766_010 Hb_000193_070 Hb_000193_070 Hb_002391_240--Hb_000193_070 Hb_002391_240--Hb_000103_300 Hb_002391_240--Hb_000152_570 Hb_002391_240--Hb_002284_060 Hb_007370_010 Hb_007370_010 Hb_002391_240--Hb_007370_010 Hb_002890_110 Hb_002890_110 Hb_001269_580--Hb_002890_110 Hb_004117_020 Hb_004117_020 Hb_001269_580--Hb_004117_020 Hb_174541_030 Hb_174541_030 Hb_001269_580--Hb_174541_030 Hb_002203_020 Hb_002203_020 Hb_001269_580--Hb_002203_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160844 1.47776 1.98522 13.5282 0.314359 0.145657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0386241 0.015196 0.173507 4.40182 8.51089

CAGE analysis