Hb_002750_050

Information

Type -
Description -
Location Contig2750: 32271-47492
Sequence    

Annotation

kegg
ID rcu:RCOM_0550500
description Chromosome-associated kinesin KLP1, putative
nr
ID XP_002533253.1
description Chromosome-associated kinesin KLP1, putative [Ricinus communis]
swissprot
ID Q8GS71
description Kinesin-like protein FRA1 OS=Arabidopsis thaliana GN=FRA1 PE=1 SV=1
trembl
ID B9T4T4
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0550500 PE=3 SV=1
Gene Ontology
ID GO:0005871
description chromosome-associated kinesin kif4a-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28818: 32278-42147 , PASA_asmbl_28819: 43327-47336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002750_050 0.0 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
2 Hb_003430_090 0.0683343908 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000392_370 0.0822935118 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
4 Hb_041290_010 0.0926787601 - - thioredoxin family protein [Populus trichocarpa]
5 Hb_000207_190 0.1015708112 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
6 Hb_013726_080 0.1032821889 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
7 Hb_000915_110 0.1046274768 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
8 Hb_000915_080 0.1151506506 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
9 Hb_000189_510 0.1173814519 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_001266_140 0.1174045487 - - PREDICTED: protein RER1B [Jatropha curcas]
11 Hb_058999_030 0.1182320632 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
12 Hb_002836_140 0.1195342785 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_002559_040 0.1202247846 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
14 Hb_001584_370 0.1220904589 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
15 Hb_002248_110 0.1224848582 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
16 Hb_000700_150 0.1232435187 - - conserved hypothetical protein [Ricinus communis]
17 Hb_017295_010 0.1259446338 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
18 Hb_004032_410 0.1295954022 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
19 Hb_000208_260 0.1300293498 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
20 Hb_002681_170 0.1316469173 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]

Gene co-expression network

sample Hb_002750_050 Hb_002750_050 Hb_003430_090 Hb_003430_090 Hb_002750_050--Hb_003430_090 Hb_000392_370 Hb_000392_370 Hb_002750_050--Hb_000392_370 Hb_041290_010 Hb_041290_010 Hb_002750_050--Hb_041290_010 Hb_000207_190 Hb_000207_190 Hb_002750_050--Hb_000207_190 Hb_013726_080 Hb_013726_080 Hb_002750_050--Hb_013726_080 Hb_000915_110 Hb_000915_110 Hb_002750_050--Hb_000915_110 Hb_003430_090--Hb_013726_080 Hb_003430_090--Hb_000392_370 Hb_003430_090--Hb_000207_190 Hb_003430_090--Hb_041290_010 Hb_000915_080 Hb_000915_080 Hb_003430_090--Hb_000915_080 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_041290_010--Hb_000915_110 Hb_012194_050 Hb_012194_050 Hb_041290_010--Hb_012194_050 Hb_004032_410 Hb_004032_410 Hb_041290_010--Hb_004032_410 Hb_023278_010 Hb_023278_010 Hb_041290_010--Hb_023278_010 Hb_000853_260 Hb_000853_260 Hb_000207_190--Hb_000853_260 Hb_000207_190--Hb_001584_370 Hb_000207_190--Hb_000392_370 Hb_002805_060 Hb_002805_060 Hb_000207_190--Hb_002805_060 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_000606_090 Hb_000606_090 Hb_000915_110--Hb_000606_090 Hb_000705_120 Hb_000705_120 Hb_000915_110--Hb_000705_120 Hb_000567_360 Hb_000567_360 Hb_000915_110--Hb_000567_360 Hb_030131_040 Hb_030131_040 Hb_000915_110--Hb_030131_040 Hb_001444_010 Hb_001444_010 Hb_000915_110--Hb_001444_010 Hb_001341_120 Hb_001341_120 Hb_000915_110--Hb_001341_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83346 1.13723 5.35225 4.79039 7.44984 7.31381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57885 1.52651 2.54097 1.77565 3.78006

CAGE analysis