Hb_002757_030

Information

Type -
Description -
Location Contig2757: 6967-10541
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI40538.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7UCS3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28844: 10801-11409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002757_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_004030_040 0.0369992206 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
3 Hb_009164_010 0.0461580712 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
4 Hb_010327_060 0.0491204711 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
5 Hb_002757_040 0.0511254811 - - -
6 Hb_006651_020 0.0525747611 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
7 Hb_153544_020 0.0677975364 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
8 Hb_001856_250 0.0717495494 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
9 Hb_002734_020 0.0723752186 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
10 Hb_010833_010 0.072629349 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
11 Hb_000487_350 0.0810034329 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000483_340 0.0837375663 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000521_030 0.0845577054 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
14 Hb_000868_020 0.0852856404 - - -
15 Hb_027577_010 0.0856388714 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
16 Hb_000581_010 0.0874856367 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
17 Hb_004884_040 0.089990021 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
18 Hb_000028_090 0.0909428137 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
19 Hb_000997_220 0.0914455272 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
20 Hb_003754_010 0.0919562455 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]

Gene co-expression network

sample Hb_002757_030 Hb_002757_030 Hb_004030_040 Hb_004030_040 Hb_002757_030--Hb_004030_040 Hb_009164_010 Hb_009164_010 Hb_002757_030--Hb_009164_010 Hb_010327_060 Hb_010327_060 Hb_002757_030--Hb_010327_060 Hb_002757_040 Hb_002757_040 Hb_002757_030--Hb_002757_040 Hb_006651_020 Hb_006651_020 Hb_002757_030--Hb_006651_020 Hb_153544_020 Hb_153544_020 Hb_002757_030--Hb_153544_020 Hb_004030_040--Hb_006651_020 Hb_004030_040--Hb_009164_010 Hb_004030_040--Hb_010327_060 Hb_004030_040--Hb_153544_020 Hb_001856_250 Hb_001856_250 Hb_004030_040--Hb_001856_250 Hb_009164_010--Hb_002757_040 Hb_000594_010 Hb_000594_010 Hb_009164_010--Hb_000594_010 Hb_009164_010--Hb_010327_060 Hb_009164_010--Hb_006651_020 Hb_010327_060--Hb_002757_040 Hb_000868_020 Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_153544_020 Hb_000028_090 Hb_000028_090 Hb_010327_060--Hb_000028_090 Hb_002757_040--Hb_000028_090 Hb_009620_080 Hb_009620_080 Hb_002757_040--Hb_009620_080 Hb_002757_040--Hb_000868_020 Hb_006651_020--Hb_153544_020 Hb_006651_020--Hb_001856_250 Hb_010833_010 Hb_010833_010 Hb_006651_020--Hb_010833_010 Hb_003754_010 Hb_003754_010 Hb_006651_020--Hb_003754_010 Hb_153544_020--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_153544_020--Hb_004957_010 Hb_153544_020--Hb_010833_010 Hb_000997_220 Hb_000997_220 Hb_153544_020--Hb_000997_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0304829 0.93529 38.3439 0 0.0481658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.77249

CAGE analysis