Hb_002758_020

Information

Type -
Description -
Location Contig2758: 30493-34353
Sequence    

Annotation

kegg
ID csv:101231054
description probable auxin efflux carrier component 1b-like
nr
ID XP_012082941.1
description PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
swissprot
ID Q9LFP6
description Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1
trembl
ID A0A067LL56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09724 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin efflux carrier component 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002758_020 0.0 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
2 Hb_002835_030 0.0252027607 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
3 Hb_010839_040 0.0389018801 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
4 Hb_166232_010 0.0442922276 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
5 Hb_000462_100 0.0447616509 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_000589_280 0.0520232418 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
7 Hb_000563_080 0.0600067946 - - -
8 Hb_100786_010 0.0615709451 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
9 Hb_001930_060 0.0673462891 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
10 Hb_001301_020 0.0707194908 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
11 Hb_020141_020 0.0724773593 - - -
12 Hb_153208_010 0.0734083734 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
13 Hb_003188_020 0.0736749718 - - chitinase, putative [Ricinus communis]
14 Hb_109163_010 0.0754522994 - - polyphenol oxidase [Hevea brasiliensis]
15 Hb_005464_040 0.0756326852 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001165_040 0.0795351339 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
17 Hb_039363_010 0.0823845221 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_002835_020 0.0827461275 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
19 Hb_038238_010 0.0845920832 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
20 Hb_002553_170 0.0861450301 - - PREDICTED: early nodulin-75-like [Jatropha curcas]

Gene co-expression network

sample Hb_002758_020 Hb_002758_020 Hb_002835_030 Hb_002835_030 Hb_002758_020--Hb_002835_030 Hb_010839_040 Hb_010839_040 Hb_002758_020--Hb_010839_040 Hb_166232_010 Hb_166232_010 Hb_002758_020--Hb_166232_010 Hb_000462_100 Hb_000462_100 Hb_002758_020--Hb_000462_100 Hb_000589_280 Hb_000589_280 Hb_002758_020--Hb_000589_280 Hb_000563_080 Hb_000563_080 Hb_002758_020--Hb_000563_080 Hb_002835_030--Hb_010839_040 Hb_002835_030--Hb_000462_100 Hb_002835_030--Hb_000589_280 Hb_002835_030--Hb_166232_010 Hb_100786_010 Hb_100786_010 Hb_002835_030--Hb_100786_010 Hb_010839_040--Hb_000462_100 Hb_010839_040--Hb_000589_280 Hb_010839_040--Hb_100786_010 Hb_010839_040--Hb_166232_010 Hb_166232_010--Hb_000563_080 Hb_001930_060 Hb_001930_060 Hb_166232_010--Hb_001930_060 Hb_001301_020 Hb_001301_020 Hb_166232_010--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_166232_010--Hb_003188_020 Hb_000462_100--Hb_000589_280 Hb_000462_100--Hb_100786_010 Hb_005464_040 Hb_005464_040 Hb_000462_100--Hb_005464_040 Hb_000589_280--Hb_100786_010 Hb_000589_280--Hb_005464_040 Hb_000563_080--Hb_001301_020 Hb_000563_080--Hb_003188_020 Hb_000563_080--Hb_005464_040 Hb_004254_070 Hb_004254_070 Hb_000563_080--Hb_004254_070 Hb_000446_100 Hb_000446_100 Hb_000563_080--Hb_000446_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0369774 0 0.0364914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.53479 0

CAGE analysis