Hb_002758_040

Information

Type -
Description -
Location Contig2758: 56896-58956
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description prolin-rich extensin-like receptor protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28849: 57356-57795 , PASA_asmbl_28850: 58466-58926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002758_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_016172_010 0.0864927896 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
3 Hb_010712_020 0.0930739363 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
4 Hb_000160_230 0.0932861224 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_001999_220 0.0951795152 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
6 Hb_027402_120 0.0972705623 - - zinc finger protein, putative [Ricinus communis]
7 Hb_007810_140 0.0986995092 - - Ankyrin repeat-containing protein [Medicago truncatula]
8 Hb_002615_050 0.0988727772 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_011824_010 0.0995337672 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
10 Hb_005511_050 0.1020961678 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
11 Hb_001863_290 0.1046961933 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
12 Hb_000859_040 0.1051841766 - - Early nodulin 16 precursor, putative [Ricinus communis]
13 Hb_006196_020 0.1058140644 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
14 Hb_000003_470 0.1077312663 - - conserved hypothetical protein [Ricinus communis]
15 Hb_039342_030 0.1083512066 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011382_030 0.1087602344 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_000251_100 0.1088386948 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_004564_010 0.10933216 - - receptor-kinase, putative [Ricinus communis]
19 Hb_139460_010 0.1103994728 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
20 Hb_025526_090 0.1137350487 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]

Gene co-expression network

sample Hb_002758_040 Hb_002758_040 Hb_016172_010 Hb_016172_010 Hb_002758_040--Hb_016172_010 Hb_010712_020 Hb_010712_020 Hb_002758_040--Hb_010712_020 Hb_000160_230 Hb_000160_230 Hb_002758_040--Hb_000160_230 Hb_001999_220 Hb_001999_220 Hb_002758_040--Hb_001999_220 Hb_027402_120 Hb_027402_120 Hb_002758_040--Hb_027402_120 Hb_007810_140 Hb_007810_140 Hb_002758_040--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_016172_010--Hb_039342_030 Hb_002615_050 Hb_002615_050 Hb_016172_010--Hb_002615_050 Hb_025526_090 Hb_025526_090 Hb_016172_010--Hb_025526_090 Hb_011824_010 Hb_011824_010 Hb_016172_010--Hb_011824_010 Hb_008705_070 Hb_008705_070 Hb_016172_010--Hb_008705_070 Hb_006196_020 Hb_006196_020 Hb_016172_010--Hb_006196_020 Hb_010712_020--Hb_011824_010 Hb_001863_290 Hb_001863_290 Hb_010712_020--Hb_001863_290 Hb_001141_170 Hb_001141_170 Hb_010712_020--Hb_001141_170 Hb_010712_020--Hb_000160_230 Hb_010712_020--Hb_007810_140 Hb_064398_010 Hb_064398_010 Hb_010712_020--Hb_064398_010 Hb_000160_230--Hb_007810_140 Hb_000859_040 Hb_000859_040 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_002615_050 Hb_000160_230--Hb_006196_020 Hb_000160_230--Hb_011824_010 Hb_001410_090 Hb_001410_090 Hb_001999_220--Hb_001410_090 Hb_001080_310 Hb_001080_310 Hb_001999_220--Hb_001080_310 Hb_001999_220--Hb_000859_040 Hb_001047_250 Hb_001047_250 Hb_001999_220--Hb_001047_250 Hb_002281_070 Hb_002281_070 Hb_001999_220--Hb_002281_070 Hb_001114_300 Hb_001114_300 Hb_001999_220--Hb_001114_300 Hb_002534_080 Hb_002534_080 Hb_027402_120--Hb_002534_080 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_027402_120--Hb_002615_050 Hb_028013_010 Hb_028013_010 Hb_027402_120--Hb_028013_010 Hb_000488_040 Hb_000488_040 Hb_027402_120--Hb_000488_040 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_006196_020 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.78535 22.0942 1.79893 3.64407 0.188672 0.905916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.457972 0.617338 0 149.639 0.207014

CAGE analysis