Hb_002759_030

Information

Type -
Description -
Location Contig2759: 15274-19328
Sequence    

Annotation

kegg
ID rcu:RCOM_0393950
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012092052.1
description PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID A0A067JEY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21784 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28851: 15696-16745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_030 0.0 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
2 Hb_005305_040 0.1028742651 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
3 Hb_001195_710 0.1056078412 - - glycosyltransferase family GT8 protein [Populus deltoides]
4 Hb_014361_010 0.1056352652 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
5 Hb_000457_120 0.1113362545 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
6 Hb_000928_200 0.1116187838 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
7 Hb_001001_070 0.1149971477 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
8 Hb_000030_130 0.125414558 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_008461_060 0.1265285984 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
10 Hb_000302_320 0.1285381959 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
11 Hb_001936_120 0.1316989484 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
12 Hb_000251_120 0.1324666187 - - O-acetyltransferase, putative [Ricinus communis]
13 Hb_000864_050 0.1328292345 - - zinc finger protein, putative [Ricinus communis]
14 Hb_174541_030 0.133036437 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
15 Hb_002081_020 0.1341661081 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
16 Hb_005914_120 0.1352399603 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
17 Hb_019516_060 0.136297077 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
18 Hb_000637_100 0.136779138 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
19 Hb_000358_060 0.1368609715 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
20 Hb_000236_290 0.1371610429 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002759_030 Hb_002759_030 Hb_005305_040 Hb_005305_040 Hb_002759_030--Hb_005305_040 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_014361_010 Hb_014361_010 Hb_002759_030--Hb_014361_010 Hb_000457_120 Hb_000457_120 Hb_002759_030--Hb_000457_120 Hb_000928_200 Hb_000928_200 Hb_002759_030--Hb_000928_200 Hb_001001_070 Hb_001001_070 Hb_002759_030--Hb_001001_070 Hb_000161_140 Hb_000161_140 Hb_005305_040--Hb_000161_140 Hb_001936_120 Hb_001936_120 Hb_005305_040--Hb_001936_120 Hb_005305_040--Hb_000928_200 Hb_005305_040--Hb_000457_120 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_001096_010 Hb_001096_010 Hb_001195_710--Hb_001096_010 Hb_000368_050 Hb_000368_050 Hb_001195_710--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_001195_710--Hb_001511_220 Hb_002171_050 Hb_002171_050 Hb_001195_710--Hb_002171_050 Hb_182869_010 Hb_182869_010 Hb_001195_710--Hb_182869_010 Hb_000449_070 Hb_000449_070 Hb_001195_710--Hb_000449_070 Hb_000864_050 Hb_000864_050 Hb_014361_010--Hb_000864_050 Hb_014361_010--Hb_005305_040 Hb_004957_050 Hb_004957_050 Hb_014361_010--Hb_004957_050 Hb_014361_010--Hb_001195_710 Hb_014361_010--Hb_001001_070 Hb_000457_120--Hb_000928_200 Hb_000457_120--Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_000856_030 Hb_000856_030 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_000251_120 Hb_000251_120 Hb_001001_070--Hb_000251_120 Hb_008461_060 Hb_008461_060 Hb_001001_070--Hb_008461_060 Hb_000108_180 Hb_000108_180 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167332 2.64604 4.40211 26.5334 0.0534448 0.0263263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.459545 0.641005 0.374692 1.09785 12.6687

CAGE analysis