Hb_002759_060

Information

Type -
Description -
Location Contig2759: 34479-38843
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10560g
description POPTRDRAFT_822017; hypothetical protein
nr
ID XP_012092050.1
description PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
swissprot
ID Q6PBA2
description Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1
trembl
ID A0A067JMS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28855: 34368-38863 , PASA_asmbl_28856: 34706-34856
cDNA
(Sanger)
(ID:Location)		 001_A08.ab1: 34566-38572 , 017_B02.ab1: 34566-38459 , 018_G19.ab1: 34544-38421 , 030_D22.ab1: 34370-38250 , 033_B18.ab1: 34562-38488 , 033_G19.ab1: 34562-38489 , 039_D11.ab1: 34544-38376

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_060 0.0 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
2 Hb_004218_110 0.0484363584 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
3 Hb_001833_110 0.0614455109 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027073_040 0.0625514427 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
5 Hb_003996_020 0.0640672452 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_025240_040 0.065256123 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
7 Hb_000058_060 0.0681392395 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
8 Hb_005289_030 0.069307014 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
9 Hb_001360_050 0.0701156186 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
10 Hb_005092_060 0.0716223595 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
11 Hb_002005_020 0.0718507204 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001369_690 0.0741137423 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_003125_010 0.0741493126 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
14 Hb_004254_120 0.0745675973 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000270_370 0.0747950154 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
16 Hb_033834_040 0.075455323 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000041_050 0.0766863858 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
18 Hb_002477_330 0.0785228397 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
19 Hb_000979_230 0.0789283162 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
20 Hb_006117_070 0.0789327147 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_060 Hb_002759_060 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_000270_370 Hb_000270_370 Hb_027073_040--Hb_000270_370 Hb_033834_040 Hb_033834_040 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310 Hb_006922_110 Hb_006922_110 Hb_003996_020--Hb_006922_110 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_003996_020--Hb_033834_040 Hb_154648_010 Hb_154648_010 Hb_003996_020--Hb_154648_010 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_000009_460 Hb_000009_460 Hb_000058_060--Hb_000009_460 Hb_007416_320 Hb_007416_320 Hb_000058_060--Hb_007416_320 Hb_005289_030 Hb_005289_030 Hb_000058_060--Hb_005289_030 Hb_159809_020 Hb_159809_020 Hb_000058_060--Hb_159809_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6899 12.0936 12.3744 24.6957 23.1626 45.4822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.4326 54.7101 52.0884 29.9264 18.0407

CAGE analysis