Hb_002759_110

Information

Type -
Description -
Location Contig2759: 111693-115957
Sequence    

Annotation

kegg
ID tcc:TCM_010219
description RNA-binding family protein, putative isoform 1
nr
ID XP_007044531.1
description RNA-binding family protein, putative isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E6U3
description RNA-binding family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_010219 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_110 0.0 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
2 Hb_000270_610 0.1885752474 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
3 Hb_001823_060 0.1920172766 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
4 Hb_000175_190 0.2116814141 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
5 Hb_005144_070 0.2208170287 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000577_090 0.2249009481 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
7 Hb_000111_100 0.2281345737 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
8 Hb_002526_020 0.2298246806 - - -
9 Hb_010815_030 0.2300886603 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
10 Hb_000434_020 0.2315103886 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
11 Hb_000454_180 0.2338039256 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
12 Hb_002713_080 0.2345870579 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
13 Hb_011224_040 0.2361954318 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
14 Hb_003849_270 0.2381760535 - - -
15 Hb_003376_380 0.2395888042 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
16 Hb_073490_020 0.240187582 - - hypothetical protein PRUPE_ppa016333mg, partial [Prunus persica]
17 Hb_000005_300 0.2403796004 - - conserved hypothetical protein [Ricinus communis]
18 Hb_101430_010 0.2437123859 - - -
19 Hb_003462_160 0.2444766581 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
20 Hb_000500_210 0.2447761699 - - -

Gene co-expression network

sample Hb_002759_110 Hb_002759_110 Hb_000270_610 Hb_000270_610 Hb_002759_110--Hb_000270_610 Hb_001823_060 Hb_001823_060 Hb_002759_110--Hb_001823_060 Hb_000175_190 Hb_000175_190 Hb_002759_110--Hb_000175_190 Hb_005144_070 Hb_005144_070 Hb_002759_110--Hb_005144_070 Hb_000577_090 Hb_000577_090 Hb_002759_110--Hb_000577_090 Hb_000111_100 Hb_000111_100 Hb_002759_110--Hb_000111_100 Hb_000270_610--Hb_000111_100 Hb_002391_220 Hb_002391_220 Hb_000270_610--Hb_002391_220 Hb_000530_120 Hb_000530_120 Hb_000270_610--Hb_000530_120 Hb_000445_490 Hb_000445_490 Hb_000270_610--Hb_000445_490 Hb_000260_200 Hb_000260_200 Hb_000270_610--Hb_000260_200 Hb_000599_280 Hb_000599_280 Hb_000270_610--Hb_000599_280 Hb_000056_070 Hb_000056_070 Hb_001823_060--Hb_000056_070 Hb_003349_030 Hb_003349_030 Hb_001823_060--Hb_003349_030 Hb_019762_050 Hb_019762_050 Hb_001823_060--Hb_019762_050 Hb_000005_300 Hb_000005_300 Hb_001823_060--Hb_000005_300 Hb_017845_010 Hb_017845_010 Hb_001823_060--Hb_017845_010 Hb_001252_220 Hb_001252_220 Hb_001823_060--Hb_001252_220 Hb_000723_340 Hb_000723_340 Hb_000175_190--Hb_000723_340 Hb_027298_030 Hb_027298_030 Hb_000175_190--Hb_027298_030 Hb_000175_190--Hb_017845_010 Hb_000175_190--Hb_001823_060 Hb_097218_020 Hb_097218_020 Hb_000175_190--Hb_097218_020 Hb_000809_060 Hb_000809_060 Hb_005144_070--Hb_000809_060 Hb_007313_080 Hb_007313_080 Hb_005144_070--Hb_007313_080 Hb_000768_130 Hb_000768_130 Hb_005144_070--Hb_000768_130 Hb_002081_030 Hb_002081_030 Hb_005144_070--Hb_002081_030 Hb_000454_180 Hb_000454_180 Hb_005144_070--Hb_000454_180 Hb_000742_280 Hb_000742_280 Hb_005144_070--Hb_000742_280 Hb_000699_090 Hb_000699_090 Hb_000577_090--Hb_000699_090 Hb_000093_110 Hb_000093_110 Hb_000577_090--Hb_000093_110 Hb_002006_130 Hb_002006_130 Hb_000577_090--Hb_002006_130 Hb_000840_180 Hb_000840_180 Hb_000577_090--Hb_000840_180 Hb_003929_150 Hb_003929_150 Hb_000577_090--Hb_003929_150 Hb_000676_160 Hb_000676_160 Hb_000577_090--Hb_000676_160 Hb_000645_140 Hb_000645_140 Hb_000111_100--Hb_000645_140 Hb_147752_010 Hb_147752_010 Hb_000111_100--Hb_147752_010 Hb_000878_020 Hb_000878_020 Hb_000111_100--Hb_000878_020 Hb_027472_160 Hb_027472_160 Hb_000111_100--Hb_027472_160 Hb_000062_390 Hb_000062_390 Hb_000111_100--Hb_000062_390 Hb_000111_100--Hb_000093_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.529375 0.767686 2.41189 1.13563 0.480524 0.252147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.65947 9.059 0.28752 0.643259 2.978

CAGE analysis