Hb_002759_130

Information

Type -
Description -
Location Contig2759: 127000-128086
Sequence    

Annotation

kegg
ID rcu:RCOM_2150310
description hypothetical protein
nr
ID XP_002534527.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T8F8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2150310 PE=4 SV=1
Gene Ontology
ID GO:0042646
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008147_030 0.1871312137 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
3 Hb_022749_030 0.2116131067 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_134732_010 0.2263998594 - - -
5 Hb_000548_010 0.226754885 - - -
6 Hb_156144_020 0.2314408893 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
7 Hb_000345_480 0.234797216 - - cyclin-dependent protein kinase, putative [Ricinus communis]
8 Hb_003494_260 0.2384605353 - - -
9 Hb_005892_070 0.2404940568 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
10 Hb_000028_630 0.2428058585 - - PIN-like protein, partial [Selaginella apoda]
11 Hb_000153_040 0.2438192479 - - -
12 Hb_000200_060 0.2447556631 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
13 Hb_013983_010 0.2449021092 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
14 Hb_002232_290 0.2474950857 - - -
15 Hb_000007_310 0.2516405229 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
16 Hb_001892_160 0.2551103689 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
17 Hb_005568_070 0.2562405907 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
18 Hb_141838_010 0.2564370825 - - -
19 Hb_184629_010 0.2573494428 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
20 Hb_006960_020 0.2589013057 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]

Gene co-expression network

sample Hb_002759_130 Hb_002759_130 Hb_008147_030 Hb_008147_030 Hb_002759_130--Hb_008147_030 Hb_022749_030 Hb_022749_030 Hb_002759_130--Hb_022749_030 Hb_134732_010 Hb_134732_010 Hb_002759_130--Hb_134732_010 Hb_000548_010 Hb_000548_010 Hb_002759_130--Hb_000548_010 Hb_156144_020 Hb_156144_020 Hb_002759_130--Hb_156144_020 Hb_000345_480 Hb_000345_480 Hb_002759_130--Hb_000345_480 Hb_008147_030--Hb_000548_010 Hb_001268_230 Hb_001268_230 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_003320_030 Hb_003320_030 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170 Hb_004460_020 Hb_004460_020 Hb_008147_030--Hb_004460_020 Hb_003540_140 Hb_003540_140 Hb_022749_030--Hb_003540_140 Hb_004307_040 Hb_004307_040 Hb_022749_030--Hb_004307_040 Hb_000329_540 Hb_000329_540 Hb_022749_030--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_022749_030--Hb_000156_030 Hb_000018_160 Hb_000018_160 Hb_022749_030--Hb_000018_160 Hb_022749_030--Hb_008147_030 Hb_000038_150 Hb_000038_150 Hb_134732_010--Hb_000038_150 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_134732_010--Hb_001159_210 Hb_134732_010--Hb_003320_030 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060 Hb_000548_010--Hb_003320_030 Hb_000548_010--Hb_156144_020 Hb_001146_070 Hb_001146_070 Hb_000548_010--Hb_001146_070 Hb_000548_010--Hb_001268_230 Hb_001017_100 Hb_001017_100 Hb_000548_010--Hb_001017_100 Hb_001892_160 Hb_001892_160 Hb_156144_020--Hb_001892_160 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_156144_020--Hb_001017_100 Hb_007634_020 Hb_007634_020 Hb_156144_020--Hb_007634_020 Hb_000345_480--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_000345_480--Hb_000153_040 Hb_013983_010 Hb_013983_010 Hb_000345_480--Hb_013983_010 Hb_075570_010 Hb_075570_010 Hb_000345_480--Hb_075570_010 Hb_132629_010 Hb_132629_010 Hb_000345_480--Hb_132629_010 Hb_029866_010 Hb_029866_010 Hb_000345_480--Hb_029866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04805 0 0.345156 0 3.05887 1.51747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.389682 0.0487328 0

CAGE analysis