Hb_002759_150

Information

Type -
Description -
Location Contig2759: 138765-143674
Sequence    

Annotation

kegg
ID rcu:RCOM_0699960
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012092036.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
swissprot
ID Q944S1
description DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1
trembl
ID A0A067JMR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21771 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 22 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28865: 139051-141311 , PASA_asmbl_28866: 141369-143522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_150 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
2 Hb_003952_090 0.0768807526 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
3 Hb_000465_460 0.0895049398 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
4 Hb_004837_240 0.0970397873 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
5 Hb_001481_090 0.0984073863 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
6 Hb_001766_110 0.0997288856 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
7 Hb_003992_240 0.0998859635 - - -
8 Hb_000085_050 0.1035650154 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_011609_100 0.1039351536 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
10 Hb_000251_130 0.1056843566 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
11 Hb_004931_070 0.1081592483 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
12 Hb_058999_020 0.1083867706 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
13 Hb_000003_320 0.108503502 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
14 Hb_001157_040 0.1104834403 - - casein kinase, putative [Ricinus communis]
15 Hb_001369_220 0.1114353269 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
16 Hb_001828_060 0.1120818831 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
17 Hb_001030_020 0.1120943323 - - Poly(A) polymerase alpha, putative [Ricinus communis]
18 Hb_015279_010 0.1121684011 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
19 Hb_002471_150 0.1124813165 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
20 Hb_000976_310 0.1126724158 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_150 Hb_002759_150 Hb_003952_090 Hb_003952_090 Hb_002759_150--Hb_003952_090 Hb_000465_460 Hb_000465_460 Hb_002759_150--Hb_000465_460 Hb_004837_240 Hb_004837_240 Hb_002759_150--Hb_004837_240 Hb_001481_090 Hb_001481_090 Hb_002759_150--Hb_001481_090 Hb_001766_110 Hb_001766_110 Hb_002759_150--Hb_001766_110 Hb_003992_240 Hb_003992_240 Hb_002759_150--Hb_003992_240 Hb_002477_280 Hb_002477_280 Hb_003952_090--Hb_002477_280 Hb_003952_090--Hb_001481_090 Hb_001369_220 Hb_001369_220 Hb_003952_090--Hb_001369_220 Hb_003952_090--Hb_001766_110 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000317_240 Hb_000317_240 Hb_000465_460--Hb_000317_240 Hb_004931_070 Hb_004931_070 Hb_000465_460--Hb_004931_070 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_000684_380 Hb_000684_380 Hb_004837_240--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_004837_240--Hb_002320_040 Hb_000589_120 Hb_000589_120 Hb_004837_240--Hb_000589_120 Hb_014109_040 Hb_014109_040 Hb_004837_240--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_004837_240--Hb_007576_080 Hb_004837_240--Hb_000317_240 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_001766_110--Hb_000656_400 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050 Hb_011609_100 Hb_011609_100 Hb_003992_240--Hb_011609_100 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000788_100 Hb_000788_100 Hb_003992_240--Hb_000788_100 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.67321 5.57564 2.81974 2.27855 4.91377 5.80819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73892 11.8688 5.33182 6.03663 3.01806

CAGE analysis