Hb_002759_180

Information

Type -
Description -
Location Contig2759: 184068-184933
Sequence    

Annotation

kegg
ID rcu:RCOM_0699940
description Gibberellin-regulated protein 3 precursor, putative
nr
ID XP_012092033.1
description PREDICTED: snakin-2-like [Jatropha curcas]
swissprot
ID Q93X17
description Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
trembl
ID B9S2K0
description Gibberellin-regulated protein 3, putative OS=Ricinus communis GN=RCOM_0699940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28867: 183908-184841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_180 0.0 - - PREDICTED: snakin-2-like [Jatropha curcas]
2 Hb_005529_010 0.1554308863 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000933_050 0.1595219346 - - protein binding protein, putative [Ricinus communis]
4 Hb_017170_020 0.1843106691 - - PREDICTED: OPA3-like protein isoform X2 [Jatropha curcas]
5 Hb_000001_110 0.1885904051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000098_190 0.2001887023 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
7 Hb_052135_030 0.2002178771 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
8 Hb_001545_040 0.2025109677 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
9 Hb_000307_170 0.2025576423 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
10 Hb_001776_090 0.2051359818 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
11 Hb_004032_060 0.2057054154 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
12 Hb_004046_040 0.2063504848 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
13 Hb_002007_300 0.2077729612 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
14 Hb_006501_150 0.2081131795 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001405_050 0.2103755789 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
16 Hb_033080_010 0.2118684765 - - -
17 Hb_002784_040 0.2120384219 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
18 Hb_003029_080 0.212896784 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
19 Hb_001623_330 0.2133332777 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
20 Hb_001951_260 0.2154812983 - - 60S ribosomal protein L32, putative [Ricinus communis]

Gene co-expression network

sample Hb_002759_180 Hb_002759_180 Hb_005529_010 Hb_005529_010 Hb_002759_180--Hb_005529_010 Hb_000933_050 Hb_000933_050 Hb_002759_180--Hb_000933_050 Hb_017170_020 Hb_017170_020 Hb_002759_180--Hb_017170_020 Hb_000001_110 Hb_000001_110 Hb_002759_180--Hb_000001_110 Hb_000098_190 Hb_000098_190 Hb_002759_180--Hb_000098_190 Hb_052135_030 Hb_052135_030 Hb_002759_180--Hb_052135_030 Hb_033080_010 Hb_033080_010 Hb_005529_010--Hb_033080_010 Hb_001198_090 Hb_001198_090 Hb_005529_010--Hb_001198_090 Hb_005529_010--Hb_000001_110 Hb_005529_010--Hb_000933_050 Hb_005333_040 Hb_005333_040 Hb_005529_010--Hb_005333_040 Hb_000307_170 Hb_000307_170 Hb_005529_010--Hb_000307_170 Hb_000933_050--Hb_000098_190 Hb_004032_060 Hb_004032_060 Hb_000933_050--Hb_004032_060 Hb_000714_030 Hb_000714_030 Hb_000933_050--Hb_000714_030 Hb_001951_260 Hb_001951_260 Hb_000933_050--Hb_001951_260 Hb_000670_020 Hb_000670_020 Hb_000933_050--Hb_000670_020 Hb_000933_050--Hb_000001_110 Hb_004295_020 Hb_004295_020 Hb_017170_020--Hb_004295_020 Hb_000621_050 Hb_000621_050 Hb_017170_020--Hb_000621_050 Hb_017170_020--Hb_052135_030 Hb_002498_180 Hb_002498_180 Hb_017170_020--Hb_002498_180 Hb_003029_080 Hb_003029_080 Hb_017170_020--Hb_003029_080 Hb_001623_330 Hb_001623_330 Hb_017170_020--Hb_001623_330 Hb_000270_840 Hb_000270_840 Hb_000001_110--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_000001_110--Hb_000538_020 Hb_001405_050 Hb_001405_050 Hb_000001_110--Hb_001405_050 Hb_000666_110 Hb_000666_110 Hb_000001_110--Hb_000666_110 Hb_002784_040 Hb_002784_040 Hb_000098_190--Hb_002784_040 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_000098_190--Hb_000714_030 Hb_008578_010 Hb_008578_010 Hb_000098_190--Hb_008578_010 Hb_006816_150 Hb_006816_150 Hb_000098_190--Hb_006816_150 Hb_004899_220 Hb_004899_220 Hb_052135_030--Hb_004899_220 Hb_001369_650 Hb_001369_650 Hb_052135_030--Hb_001369_650 Hb_000260_050 Hb_000260_050 Hb_052135_030--Hb_000260_050 Hb_010810_050 Hb_010810_050 Hb_052135_030--Hb_010810_050 Hb_052135_030--Hb_001623_330 Hb_052135_030--Hb_006816_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.0492 13.2125 43.1388 8.10829 139.557 39.0257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7692 151.193 13.2305 17.3707 0.585838

CAGE analysis