Hb_002759_190

Information

Type -
Description -
Location Contig2759: 194131-202363
Sequence    

Annotation

kegg
ID rcu:RCOM_0699930
description leucine rich repeat-containing protein, putative
nr
ID XP_012092032.1
description PREDICTED: protein NLRC3 [Jatropha curcas]
swissprot
ID Q7RTR2
description Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2
trembl
ID A0A067JBY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21768 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein nlrc3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28868: 194108-202310 , PASA_asmbl_28869: 201462-202253
cDNA
(Sanger)
(ID:Location)		 012_L18.ab1: 199400-202272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_190 0.0 - - PREDICTED: protein NLRC3 [Jatropha curcas]
2 Hb_003747_230 0.0712734108 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
3 Hb_000012_250 0.0742709574 - - hypothetical protein L484_019524 [Morus notabilis]
4 Hb_001863_380 0.0782631612 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
5 Hb_005494_010 0.0810182031 - - catalytic, putative [Ricinus communis]
6 Hb_000227_170 0.0853608781 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_001900_140 0.0858740326 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
8 Hb_107879_010 0.088229838 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_006132_090 0.0901118244 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
10 Hb_062226_060 0.0903607702 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
11 Hb_000811_070 0.0927724501 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
12 Hb_007904_230 0.0928807097 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
13 Hb_000035_270 0.0937174149 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
14 Hb_000304_070 0.0953229547 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
15 Hb_001287_040 0.0956060091 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_001322_110 0.095853844 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005167_010 0.0962620907 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
18 Hb_000317_260 0.0964768876 - - unknown [Populus trichocarpa]
19 Hb_001472_100 0.0967146443 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_005946_040 0.096939012 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_190 Hb_002759_190 Hb_003747_230 Hb_003747_230 Hb_002759_190--Hb_003747_230 Hb_000012_250 Hb_000012_250 Hb_002759_190--Hb_000012_250 Hb_001863_380 Hb_001863_380 Hb_002759_190--Hb_001863_380 Hb_005494_010 Hb_005494_010 Hb_002759_190--Hb_005494_010 Hb_000227_170 Hb_000227_170 Hb_002759_190--Hb_000227_170 Hb_001900_140 Hb_001900_140 Hb_002759_190--Hb_001900_140 Hb_000317_260 Hb_000317_260 Hb_003747_230--Hb_000317_260 Hb_001587_180 Hb_001587_180 Hb_003747_230--Hb_001587_180 Hb_005539_010 Hb_005539_010 Hb_003747_230--Hb_005539_010 Hb_004440_060 Hb_004440_060 Hb_003747_230--Hb_004440_060 Hb_003747_230--Hb_000227_170 Hb_000731_160 Hb_000731_160 Hb_000012_250--Hb_000731_160 Hb_000012_250--Hb_001863_380 Hb_107879_010 Hb_107879_010 Hb_000012_250--Hb_107879_010 Hb_000163_100 Hb_000163_100 Hb_000012_250--Hb_000163_100 Hb_001472_100 Hb_001472_100 Hb_000012_250--Hb_001472_100 Hb_000413_240 Hb_000413_240 Hb_001863_380--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_001863_380--Hb_002946_190 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_012565_070 Hb_012565_070 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_113853_010 Hb_113853_010 Hb_005494_010--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_005494_010--Hb_001623_270 Hb_005946_040 Hb_005946_040 Hb_005494_010--Hb_005946_040 Hb_000304_070 Hb_000304_070 Hb_005494_010--Hb_000304_070 Hb_001109_050 Hb_001109_050 Hb_005494_010--Hb_001109_050 Hb_005494_010--Hb_000227_170 Hb_000227_170--Hb_107879_010 Hb_001935_100 Hb_001935_100 Hb_000227_170--Hb_001935_100 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000227_170--Hb_000304_070 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26718 4.10202 13.4764 5.99242 4.2202 4.30162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.71397 10.2106 5.61871 6.48471 10.2187

CAGE analysis