Hb_002759_240

Information

Type -
Description -
Location Contig2759: 229073-230214
Sequence    

Annotation

kegg
ID dosa:Os01t0658500-01
description Os01g0658500; ESCRT-II complex, vps25 subunit domain containing protein.
nr
ID KCW72869.1
description hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059C3N6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01319 PE=4 SV=1
Gene Ontology
ID GO:0000814
description vacuolar protein sorting-associated protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28872: 228732-230506 , PASA_asmbl_28873: 228668-229687 , PASA_asmbl_28874: 229303-229638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_240 0.0 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
2 Hb_001894_170 0.0961015833 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
3 Hb_001846_070 0.1110128884 - - PREDICTED: fructokinase-1 [Jatropha curcas]
4 Hb_000264_020 0.1116404157 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
5 Hb_146225_010 0.1134239479 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
6 Hb_005841_040 0.1247865918 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
7 Hb_001052_030 0.1278285691 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
8 Hb_003086_060 0.1332309381 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
9 Hb_006594_020 0.1344711451 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
10 Hb_012053_050 0.1345957087 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
11 Hb_000373_180 0.1360113031 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
12 Hb_000723_190 0.1360366509 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
13 Hb_005539_240 0.136106709 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
14 Hb_001776_170 0.1368583999 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000784_030 0.1410227882 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
16 Hb_001157_010 0.1426397902 - - deoxyhypusine synthase, putative [Ricinus communis]
17 Hb_001159_200 0.1443032684 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
18 Hb_003043_120 0.1452659034 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000562_040 0.1457868162 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
20 Hb_000788_080 0.146024879 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_240 Hb_002759_240 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_000264_020 Hb_000264_020 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_017434_050 Hb_017434_050 Hb_001894_170--Hb_017434_050 Hb_001894_170--Hb_000264_020 Hb_000723_190 Hb_000723_190 Hb_001894_170--Hb_000723_190 Hb_000373_180 Hb_000373_180 Hb_001894_170--Hb_000373_180 Hb_006594_020 Hb_006594_020 Hb_001894_170--Hb_006594_020 Hb_003581_220 Hb_003581_220 Hb_001846_070--Hb_003581_220 Hb_000530_070 Hb_000530_070 Hb_001846_070--Hb_000530_070 Hb_001846_070--Hb_000264_020 Hb_001846_070--Hb_146225_010 Hb_002182_030 Hb_002182_030 Hb_001846_070--Hb_002182_030 Hb_000264_020--Hb_000373_180 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_146225_010--Hb_001052_030 Hb_146225_010--Hb_005841_050 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_001102_250 Hb_001102_250 Hb_005841_040--Hb_001102_250 Hb_002045_230 Hb_002045_230 Hb_005841_040--Hb_002045_230 Hb_011245_020 Hb_011245_020 Hb_005841_040--Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_005841_040--Hb_003043_120 Hb_000676_240 Hb_000676_240 Hb_005841_040--Hb_000676_240 Hb_001052_030--Hb_002045_230 Hb_000094_110 Hb_000094_110 Hb_001052_030--Hb_000094_110 Hb_001052_030--Hb_005841_050 Hb_002918_140 Hb_002918_140 Hb_001052_030--Hb_002918_140 Hb_001052_030--Hb_000123_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1856 3.05955 2.89809 3.26835 5.91063 5.56381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0453 62.6189 52.7654 8.8331 5.24797

CAGE analysis