Hb_002759_260

Information

Type -
Description -
Location Contig2759: 245043-246206
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006911mg
description hypothetical protein
nr
ID XP_012092016.1
description PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
swissprot
ID O04536
description Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1
trembl
ID A0A067JP33
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_21750 PE=3 SV=1
Gene Ontology
ID GO:0016757
description probable galacturonosyltransferase-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28878: 244819-246517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_260 0.0 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
2 Hb_002875_070 0.1176937274 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
3 Hb_023344_110 0.1348581183 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
4 Hb_003849_190 0.1379753275 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
5 Hb_002450_030 0.1508195319 - - ATPP2-A13, putative [Ricinus communis]
6 Hb_000042_330 0.152493985 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001511_190 0.1538335103 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
8 Hb_001500_030 0.1570446213 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
9 Hb_012107_010 0.1591697395 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
10 Hb_000371_120 0.1615440783 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
11 Hb_002217_090 0.1622132633 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
12 Hb_009189_050 0.1648005527 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
13 Hb_008248_020 0.1651442227 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
14 Hb_000103_420 0.1662247256 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
15 Hb_002078_290 0.1675143919 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
16 Hb_000069_330 0.1675157301 - - protein with unknown function [Ricinus communis]
17 Hb_000836_600 0.1681713156 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
18 Hb_000417_420 0.1692729419 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
19 Hb_014720_050 0.170155423 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
20 Hb_001133_010 0.1707806612 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002759_260 Hb_002759_260 Hb_002875_070 Hb_002875_070 Hb_002759_260--Hb_002875_070 Hb_023344_110 Hb_023344_110 Hb_002759_260--Hb_023344_110 Hb_003849_190 Hb_003849_190 Hb_002759_260--Hb_003849_190 Hb_002450_030 Hb_002450_030 Hb_002759_260--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_002759_260--Hb_000042_330 Hb_001511_190 Hb_001511_190 Hb_002759_260--Hb_001511_190 Hb_005714_100 Hb_005714_100 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200 Hb_023344_110--Hb_003849_190 Hb_002046_060 Hb_002046_060 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_000912_100 Hb_000912_100 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_000645_200 Hb_000645_200 Hb_002450_030--Hb_000645_200 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_010661_010 Hb_010661_010 Hb_000042_330--Hb_010661_010 Hb_127311_010 Hb_127311_010 Hb_000042_330--Hb_127311_010 Hb_000042_330--Hb_001500_030 Hb_013241_010 Hb_013241_010 Hb_000042_330--Hb_013241_010 Hb_000656_390 Hb_000656_390 Hb_000042_330--Hb_000656_390 Hb_000042_330--Hb_023344_110 Hb_000008_110 Hb_000008_110 Hb_001511_190--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_001511_190--Hb_000345_500 Hb_001507_030 Hb_001507_030 Hb_001511_190--Hb_001507_030 Hb_012107_010 Hb_012107_010 Hb_001511_190--Hb_012107_010 Hb_001511_190--Hb_002875_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18293 61.1556 19.0063 51.3085 2.68425 3.42962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56463 14.3657 15.4925 4.16599 19.4897

CAGE analysis