Hb_002760_020

Information

Type -
Description -
Location Contig2760: 31878-37822
Sequence    

Annotation

kegg
ID tcc:TCM_003521
description hypothetical protein
nr
ID XP_012567732.1
description PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID A0A061DW16
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003521 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105851424

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002760_020 0.0 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
2 Hb_001793_040 0.1790333712 - - hypothetical protein VITISV_006810 [Vitis vinifera]
3 Hb_000644_020 0.1927383344 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_170878_020 0.1973066456 - - -
5 Hb_002973_120 0.2077558685 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
6 Hb_077151_010 0.2112724979 - - ankyrin repeat protein [Bruguiera gymnorhiza]
7 Hb_001385_070 0.2147985213 - - hypothetical protein VITISV_019194 [Vitis vinifera]
8 Hb_000199_090 0.2169003005 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
9 Hb_040245_010 0.2180435543 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
10 Hb_003073_030 0.2190237012 - - conserved hypothetical protein [Ricinus communis]
11 Hb_079526_010 0.2200246277 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
12 Hb_010381_080 0.2203127933 - - cytochrome P450, putative [Ricinus communis]
13 Hb_032733_030 0.2211141592 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
14 Hb_001377_210 0.2211538279 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_005678_030 0.2213287152 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
16 Hb_002111_010 0.2263381515 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
17 Hb_054865_040 0.2267384451 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
18 Hb_001856_290 0.2274922076 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
19 Hb_017225_010 0.2281649889 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
20 Hb_011900_020 0.228191875 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002760_020 Hb_002760_020 Hb_001793_040 Hb_001793_040 Hb_002760_020--Hb_001793_040 Hb_000644_020 Hb_000644_020 Hb_002760_020--Hb_000644_020 Hb_170878_020 Hb_170878_020 Hb_002760_020--Hb_170878_020 Hb_002973_120 Hb_002973_120 Hb_002760_020--Hb_002973_120 Hb_077151_010 Hb_077151_010 Hb_002760_020--Hb_077151_010 Hb_001385_070 Hb_001385_070 Hb_002760_020--Hb_001385_070 Hb_001793_040--Hb_001385_070 Hb_003414_040 Hb_003414_040 Hb_001793_040--Hb_003414_040 Hb_005678_030 Hb_005678_030 Hb_001793_040--Hb_005678_030 Hb_011649_030 Hb_011649_030 Hb_001793_040--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_001793_040--Hb_127552_050 Hb_020831_070 Hb_020831_070 Hb_001793_040--Hb_020831_070 Hb_000644_020--Hb_170878_020 Hb_032016_010 Hb_032016_010 Hb_000644_020--Hb_032016_010 Hb_000567_270 Hb_000567_270 Hb_000644_020--Hb_000567_270 Hb_040245_010 Hb_040245_010 Hb_000644_020--Hb_040245_010 Hb_006455_020 Hb_006455_020 Hb_000644_020--Hb_006455_020 Hb_003073_030 Hb_003073_030 Hb_000644_020--Hb_003073_030 Hb_170878_020--Hb_040245_010 Hb_170878_020--Hb_006455_020 Hb_003462_170 Hb_003462_170 Hb_170878_020--Hb_003462_170 Hb_170878_020--Hb_003073_030 Hb_027654_010 Hb_027654_010 Hb_170878_020--Hb_027654_010 Hb_002973_120--Hb_001793_040 Hb_002973_120--Hb_001385_070 Hb_002973_120--Hb_170878_020 Hb_008055_030 Hb_008055_030 Hb_002973_120--Hb_008055_030 Hb_002973_120--Hb_127552_050 Hb_000968_070 Hb_000968_070 Hb_002973_120--Hb_000968_070 Hb_002111_010 Hb_002111_010 Hb_077151_010--Hb_002111_010 Hb_077151_010--Hb_005678_030 Hb_000441_080 Hb_000441_080 Hb_077151_010--Hb_000441_080 Hb_077151_010--Hb_003073_030 Hb_015807_020 Hb_015807_020 Hb_077151_010--Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_077151_010--Hb_001579_050 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_001385_070--Hb_011649_030 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0267029 0.172014 0.110614 0.105548 0.0282663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.150231 1.08101

CAGE analysis