Hb_002760_040

Information

Type -
Description -
Location Contig2760: 62529-66126
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12390g
description POPTRDRAFT_1107186; hypothetical protein
nr
ID XP_012081128.1
description PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
swissprot
ID Q54DS3
description Transmembrane protein DDB_G0292058 OS=Dictyostelium discoideum GN=DDB_G0292058 PE=2 SV=1
trembl
ID A0A067KEF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16981 PE=4 SV=1
Gene Ontology
ID GO:0009506
description PREDICTED: uncharacterized protein LOC105641234

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28888: 62601-66146
cDNA
(Sanger)
(ID:Location)		 014_J09.ab1: 62607-63983

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002760_040 0.0 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
2 Hb_009897_020 0.1149044234 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_005656_140 0.1303014269 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
4 Hb_003494_060 0.1455696945 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
5 Hb_002686_400 0.1461969029 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
6 Hb_117895_010 0.1553751629 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
7 Hb_003155_020 0.1563410899 - - Rpp4C3 [Medicago truncatula]
8 Hb_162074_010 0.15916601 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
9 Hb_004800_190 0.1594435559 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
10 Hb_185513_010 0.1620966797 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012725_040 0.1682975775 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_000179_230 0.1686034439 - - PREDICTED: myosin-17 [Jatropha curcas]
13 Hb_009838_060 0.1689397488 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000010_350 0.17015389 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
15 Hb_003038_010 0.1701668353 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001141_360 0.171319851 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
17 Hb_001865_060 0.1716266006 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
18 Hb_001514_060 0.1719871713 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
19 Hb_002915_070 0.174893327 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
20 Hb_000483_040 0.1857545966 - - Cell division protein ftsH, putative [Ricinus communis]

Gene co-expression network

sample Hb_002760_040 Hb_002760_040 Hb_009897_020 Hb_009897_020 Hb_002760_040--Hb_009897_020 Hb_005656_140 Hb_005656_140 Hb_002760_040--Hb_005656_140 Hb_003494_060 Hb_003494_060 Hb_002760_040--Hb_003494_060 Hb_002686_400 Hb_002686_400 Hb_002760_040--Hb_002686_400 Hb_117895_010 Hb_117895_010 Hb_002760_040--Hb_117895_010 Hb_003155_020 Hb_003155_020 Hb_002760_040--Hb_003155_020 Hb_162074_010 Hb_162074_010 Hb_009897_020--Hb_162074_010 Hb_004800_190 Hb_004800_190 Hb_009897_020--Hb_004800_190 Hb_001865_060 Hb_001865_060 Hb_009897_020--Hb_001865_060 Hb_009897_020--Hb_002686_400 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_005656_140--Hb_003494_060 Hb_009838_060 Hb_009838_060 Hb_005656_140--Hb_009838_060 Hb_129204_060 Hb_129204_060 Hb_005656_140--Hb_129204_060 Hb_005656_140--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_005656_140--Hb_002235_240 Hb_003494_060--Hb_001141_360 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_003494_060--Hb_009838_060 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080 Hb_000010_350 Hb_000010_350 Hb_002686_400--Hb_000010_350 Hb_033642_070 Hb_033642_070 Hb_002686_400--Hb_033642_070 Hb_000866_370 Hb_000866_370 Hb_002686_400--Hb_000866_370 Hb_006738_060 Hb_006738_060 Hb_002686_400--Hb_006738_060 Hb_117895_010--Hb_000866_370 Hb_001544_080 Hb_001544_080 Hb_117895_010--Hb_001544_080 Hb_011310_200 Hb_011310_200 Hb_117895_010--Hb_011310_200 Hb_004108_170 Hb_004108_170 Hb_117895_010--Hb_004108_170 Hb_117895_010--Hb_003155_020 Hb_009897_010 Hb_009897_010 Hb_003155_020--Hb_009897_010 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_005203_020 Hb_005203_020 Hb_003155_020--Hb_005203_020 Hb_003155_020--Hb_001865_060 Hb_011716_110 Hb_011716_110 Hb_003155_020--Hb_011716_110 Hb_001907_100 Hb_001907_100 Hb_003155_020--Hb_001907_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2935 294.251 13.2356 57.0812 37.7909 39.4406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4097 6.95536 36.3804 33.8915 19.178

CAGE analysis