Hb_002762_020

Information

Type -
Description -
Location Contig2762: 26242-26915
Sequence    

Annotation

kegg
ID obr:102699795
description chitinase 1-like
nr
ID CAN76728.1
description hypothetical protein VITISV_043202 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BCX8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043202 PE=4 SV=1
Gene Ontology
ID GO:0016787
description endochitinase pr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_020 0.0 - - hypothetical protein VITISV_043202 [Vitis vinifera]
2 Hb_000809_190 0.1051326663 - - PREDICTED: myosin-6-like [Jatropha curcas]
3 Hb_003106_160 0.112754209 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
4 Hb_000115_020 0.1129718289 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
5 Hb_002025_220 0.1219921243 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_000638_270 0.1272721217 - - -
7 Hb_000165_170 0.1307899077 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
8 Hb_001102_130 0.1332762557 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
9 Hb_003921_010 0.134764322 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011930_060 0.1357031284 - - nitrate transporter, putative [Ricinus communis]
11 Hb_007101_120 0.135720239 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
12 Hb_020805_050 0.1362545638 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
13 Hb_005649_060 0.1375577232 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
14 Hb_000937_010 0.1389725415 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005618_030 0.1425146922 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
16 Hb_001377_080 0.1437119667 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
17 Hb_000261_470 0.1449232839 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
18 Hb_003683_170 0.1450749024 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001287_020 0.1453307141 - - SulA [Manihot esculenta]
20 Hb_025325_010 0.1453776976 - - hypothetical protein JCGZ_09061 [Jatropha curcas]

Gene co-expression network

sample Hb_002762_020 Hb_002762_020 Hb_000809_190 Hb_000809_190 Hb_002762_020--Hb_000809_190 Hb_003106_160 Hb_003106_160 Hb_002762_020--Hb_003106_160 Hb_000115_020 Hb_000115_020 Hb_002762_020--Hb_000115_020 Hb_002025_220 Hb_002025_220 Hb_002762_020--Hb_002025_220 Hb_000638_270 Hb_000638_270 Hb_002762_020--Hb_000638_270 Hb_000165_170 Hb_000165_170 Hb_002762_020--Hb_000165_170 Hb_000445_270 Hb_000445_270 Hb_000809_190--Hb_000445_270 Hb_000809_190--Hb_000115_020 Hb_101133_030 Hb_101133_030 Hb_000809_190--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_000809_190--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_000809_190--Hb_001864_050 Hb_000749_140 Hb_000749_140 Hb_000809_190--Hb_000749_140 Hb_000007_270 Hb_000007_270 Hb_003106_160--Hb_000007_270 Hb_003106_160--Hb_000638_270 Hb_025325_010 Hb_025325_010 Hb_003106_160--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_003106_160--Hb_002609_140 Hb_007426_070 Hb_007426_070 Hb_003106_160--Hb_007426_070 Hb_005649_060 Hb_005649_060 Hb_000115_020--Hb_005649_060 Hb_000937_010 Hb_000937_010 Hb_000115_020--Hb_000937_010 Hb_000115_020--Hb_000445_270 Hb_004712_220 Hb_004712_220 Hb_000115_020--Hb_004712_220 Hb_001751_050 Hb_001751_050 Hb_000115_020--Hb_001751_050 Hb_005305_140 Hb_005305_140 Hb_002025_220--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_002025_220--Hb_000834_170 Hb_002025_220--Hb_000809_190 Hb_002025_220--Hb_000445_270 Hb_000280_030 Hb_000280_030 Hb_000638_270--Hb_000280_030 Hb_000638_270--Hb_002025_220 Hb_004374_100 Hb_004374_100 Hb_000638_270--Hb_004374_100 Hb_000042_310 Hb_000042_310 Hb_000638_270--Hb_000042_310 Hb_000227_260 Hb_000227_260 Hb_000638_270--Hb_000227_260 Hb_007242_030 Hb_007242_030 Hb_000165_170--Hb_007242_030 Hb_001736_010 Hb_001736_010 Hb_000165_170--Hb_001736_010 Hb_001823_010 Hb_001823_010 Hb_000165_170--Hb_001823_010 Hb_003921_010 Hb_003921_010 Hb_000165_170--Hb_003921_010 Hb_000003_490 Hb_000003_490 Hb_000165_170--Hb_000003_490 Hb_005245_110 Hb_005245_110 Hb_000165_170--Hb_005245_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.636309 9.47183 0.413735 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0.0864181 0 0.28454 10.6017

CAGE analysis