Hb_002762_050

Information

Type -
Description -
Location Contig2762: 57634-65933
Sequence    

Annotation

kegg
ID rcu:RCOM_1510330
description hypothetical protein
nr
ID XP_012080038.1
description PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7R9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11454 PE=4 SV=1
Gene Ontology
ID GO:0005623
description PREDICTED: uncharacterized protein LOC105640359

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28894: 60644-66080 , PASA_asmbl_28895: 57624-66080 , PASA_asmbl_28896: 61202-61389
cDNA
(Sanger)
(ID:Location)		 014_F05.ab1: 64614-66080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_050 0.0 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
2 Hb_087599_010 0.067956312 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
3 Hb_012807_030 0.0717904906 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
4 Hb_000008_160 0.0780658443 - - carboxy-lyase, putative [Ricinus communis]
5 Hb_000694_080 0.0882752816 - - phosphoribulose kinase, putative [Ricinus communis]
6 Hb_003777_080 0.0889444645 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
7 Hb_156093_010 0.0891237679 - - hypothetical protein RCOM_0504250 [Ricinus communis]
8 Hb_000185_010 0.0892929761 - - Alliin lyase precursor, putative [Ricinus communis]
9 Hb_002093_020 0.0912047808 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
10 Hb_008143_010 0.0929974173 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
11 Hb_026437_020 0.0932734391 - - ring finger protein, putative [Ricinus communis]
12 Hb_001409_080 0.0984510638 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
13 Hb_153258_040 0.1038710284 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
14 Hb_000069_760 0.1053203519 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
15 Hb_001751_050 0.1062030762 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
16 Hb_004920_020 0.1073351967 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
17 Hb_005348_120 0.1081574822 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
18 Hb_002870_070 0.1091952766 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_012389_010 0.1094139409 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
20 Hb_000017_210 0.11218167 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]

Gene co-expression network

sample Hb_002762_050 Hb_002762_050 Hb_087599_010 Hb_087599_010 Hb_002762_050--Hb_087599_010 Hb_012807_030 Hb_012807_030 Hb_002762_050--Hb_012807_030 Hb_000008_160 Hb_000008_160 Hb_002762_050--Hb_000008_160 Hb_000694_080 Hb_000694_080 Hb_002762_050--Hb_000694_080 Hb_003777_080 Hb_003777_080 Hb_002762_050--Hb_003777_080 Hb_156093_010 Hb_156093_010 Hb_002762_050--Hb_156093_010 Hb_087599_010--Hb_000694_080 Hb_087599_010--Hb_003777_080 Hb_000185_010 Hb_000185_010 Hb_087599_010--Hb_000185_010 Hb_002093_020 Hb_002093_020 Hb_087599_010--Hb_002093_020 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040 Hb_124677_010 Hb_124677_010 Hb_012807_030--Hb_124677_010 Hb_000002_140 Hb_000002_140 Hb_012807_030--Hb_000002_140 Hb_012807_030--Hb_000008_160 Hb_000866_060 Hb_000866_060 Hb_012807_030--Hb_000866_060 Hb_000128_040 Hb_000128_040 Hb_012807_030--Hb_000128_040 Hb_000008_160--Hb_002093_020 Hb_000008_160--Hb_000185_010 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_000008_160--Hb_087599_010 Hb_000017_210 Hb_000017_210 Hb_000694_080--Hb_000017_210 Hb_000482_030 Hb_000482_030 Hb_000694_080--Hb_000482_030 Hb_007426_070 Hb_007426_070 Hb_000694_080--Hb_007426_070 Hb_000483_440 Hb_000483_440 Hb_000694_080--Hb_000483_440 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_003777_080--Hb_153258_040 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_004970_060 Hb_004970_060 Hb_003777_080--Hb_004970_060 Hb_003777_080--Hb_156093_010 Hb_002121_050 Hb_002121_050 Hb_156093_010--Hb_002121_050 Hb_007537_040 Hb_007537_040 Hb_156093_010--Hb_007537_040 Hb_156093_010--Hb_000185_010 Hb_000369_110 Hb_000369_110 Hb_156093_010--Hb_000369_110 Hb_156093_010--Hb_004970_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0423432 1.16541 26.3408 9.08858 0.0391533 0.00470543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.023298 0.0275018 0 3.64657 43.8835

CAGE analysis