Hb_002762_060

Information

Type -
Description -
Location Contig2762: 72577-74441
Sequence    

Annotation

kegg
ID rcu:RCOM_1510320
description nucleotide binding protein, putative
nr
ID XP_012080036.1
description PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
swissprot
ID Q55C80
description Diphthine methyltransferase homolog OS=Dictyostelium discoideum GN=wdr85 PE=3 SV=1
trembl
ID A0A067K4L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11453 PE=4 SV=1
Gene Ontology
ID GO:0080008
description diphthine methyltransferase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28898: 72608-74027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_060 0.0 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
2 Hb_157854_010 0.0584420767 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
3 Hb_024835_030 0.060594905 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
4 Hb_004221_010 0.0611818858 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
5 Hb_004920_040 0.0662185406 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_000720_120 0.0706922708 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_158092_070 0.0745428692 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
8 Hb_004012_010 0.0746901992 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
9 Hb_002272_250 0.0751831912 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000923_020 0.0753052795 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
11 Hb_000392_270 0.0759822435 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
12 Hb_001138_050 0.0765251999 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
13 Hb_026198_050 0.0765586879 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
14 Hb_004109_200 0.0769485721 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
15 Hb_001811_150 0.0780827469 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
16 Hb_000032_570 0.0793914332 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
17 Hb_001030_120 0.0806313521 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_000853_110 0.0807686852 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
19 Hb_010449_020 0.0814083448 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
20 Hb_159558_030 0.0819441798 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]

Gene co-expression network

sample Hb_002762_060 Hb_002762_060 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_118977_020 Hb_118977_020 Hb_157854_010--Hb_118977_020 Hb_003086_020 Hb_003086_020 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140 Hb_004012_010 Hb_004012_010 Hb_024835_030--Hb_004012_010 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_024835_030--Hb_004920_040 Hb_024835_030--Hb_022250_040 Hb_000056_340 Hb_000056_340 Hb_024835_030--Hb_000056_340 Hb_004221_010--Hb_158092_070 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004920_040--Hb_004012_010 Hb_006775_080 Hb_006775_080 Hb_004920_040--Hb_006775_080 Hb_004920_040--Hb_004221_010 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000613_140 Hb_000613_140 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000720_120--Hb_000032_570 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2794 12.0209 5.26701 5.46873 22.4463 26.9125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5185 27.2961 18.813 10.8241 2.60661

CAGE analysis