Hb_002762_120

Information

Type -
Description -
Location Contig2762: 120930-125899
Sequence    

Annotation

kegg
ID rcu:RCOM_1509950
description hypothetical protein
nr
ID XP_012080023.1
description PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11444 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28904: 120942-125933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_120 0.0 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]
2 Hb_000959_260 0.0844863701 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
3 Hb_010180_020 0.0913895133 - - hypothetical protein glysoja_030394 [Glycine soja]
4 Hb_010504_020 0.0970505191 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_003001_120 0.0982292387 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
6 Hb_007380_070 0.0993295161 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_003929_160 0.0997957589 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
8 Hb_002411_170 0.1000836569 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
9 Hb_000045_090 0.1002483587 - - PREDICTED: syntaxin-31 [Jatropha curcas]
10 Hb_006541_030 0.1017657195 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
11 Hb_012008_020 0.1032592974 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
12 Hb_002835_080 0.1039206909 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
13 Hb_020956_020 0.1041802132 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
14 Hb_001959_080 0.1067915165 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000620_080 0.107781926 - - hypothetical protein F775_32679 [Aegilops tauschii]
16 Hb_000243_030 0.108043238 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
17 Hb_018133_060 0.1080926434 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
18 Hb_009557_070 0.1084251422 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005539_350 0.1085458576 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000988_080 0.1085949268 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002762_120 Hb_002762_120 Hb_000959_260 Hb_000959_260 Hb_002762_120--Hb_000959_260 Hb_010180_020 Hb_010180_020 Hb_002762_120--Hb_010180_020 Hb_010504_020 Hb_010504_020 Hb_002762_120--Hb_010504_020 Hb_003001_120 Hb_003001_120 Hb_002762_120--Hb_003001_120 Hb_007380_070 Hb_007380_070 Hb_002762_120--Hb_007380_070 Hb_003929_160 Hb_003929_160 Hb_002762_120--Hb_003929_160 Hb_000959_260--Hb_010504_020 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_148644_010 Hb_148644_010 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_002477_330 Hb_002477_330 Hb_000959_260--Hb_002477_330 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_005305_080 Hb_005305_080 Hb_010504_020--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_006541_030 Hb_006541_030 Hb_007380_070--Hb_006541_030 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_000398_180 Hb_000398_180 Hb_007380_070--Hb_000398_180 Hb_007380_070--Hb_003929_160 Hb_005539_350 Hb_005539_350 Hb_007380_070--Hb_005539_350 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_004109_090 Hb_004109_090 Hb_003929_160--Hb_004109_090 Hb_003929_160--Hb_005539_350 Hb_005663_060 Hb_005663_060 Hb_003929_160--Hb_005663_060 Hb_000926_280 Hb_000926_280 Hb_003929_160--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.5042 21.5511 21.7338 27.1063 27.1531 76.3348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.1712 61.0411 44.8113 10.754 24.4199

CAGE analysis