Hb_002766_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig2766: 84923-85873
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36220g
description POPTRDRAFT_549635; hypothetical protein
nr
ID KDP26736.1
description hypothetical protein JCGZ_17894 [Jatropha curcas]
swissprot
ID P81394
description Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1
trembl
ID A0A067JS30
description MYB family protein OS=Jatropha curcas GN=JCGZ_17894 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein 315-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002766_070 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
2 Hb_002025_280 0.0152566666 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
3 Hb_033312_100 0.0549004515 - - -
4 Hb_085600_010 0.0595701805 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
5 Hb_000531_010 0.0623708612 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
6 Hb_001242_170 0.0740501815 - - conserved hypothetical protein [Ricinus communis]
7 Hb_180864_010 0.0786198995 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
8 Hb_000984_280 0.0935735398 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
9 Hb_000504_060 0.0951632013 - - Cell division cycle protein cdt2, putative [Ricinus communis]
10 Hb_005306_060 0.0961603979 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
11 Hb_059502_010 0.1045500031 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
12 Hb_000422_040 0.1058107776 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
13 Hb_003010_050 0.1134088005 - - -
14 Hb_000163_020 0.1161122906 - - -
15 Hb_046615_040 0.1182877989 - - unnamed protein product [Vitis vinifera]
16 Hb_000140_200 0.1257653558 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
17 Hb_000732_200 0.1262344361 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002759_200 0.127371391 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
19 Hb_185666_010 0.1309032097 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
20 Hb_074674_010 0.1321243906 - - Cell division cycle protein cdt2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002766_070 Hb_002766_070 Hb_002025_280 Hb_002025_280 Hb_002766_070--Hb_002025_280 Hb_033312_100 Hb_033312_100 Hb_002766_070--Hb_033312_100 Hb_085600_010 Hb_085600_010 Hb_002766_070--Hb_085600_010 Hb_000531_010 Hb_000531_010 Hb_002766_070--Hb_000531_010 Hb_001242_170 Hb_001242_170 Hb_002766_070--Hb_001242_170 Hb_180864_010 Hb_180864_010 Hb_002766_070--Hb_180864_010 Hb_002025_280--Hb_033312_100 Hb_002025_280--Hb_000531_010 Hb_002025_280--Hb_085600_010 Hb_002025_280--Hb_001242_170 Hb_002025_280--Hb_180864_010 Hb_033312_100--Hb_000531_010 Hb_000422_040 Hb_000422_040 Hb_033312_100--Hb_000422_040 Hb_059502_010 Hb_059502_010 Hb_033312_100--Hb_059502_010 Hb_046204_010 Hb_046204_010 Hb_033312_100--Hb_046204_010 Hb_085600_010--Hb_001242_170 Hb_085600_010--Hb_180864_010 Hb_000984_280 Hb_000984_280 Hb_085600_010--Hb_000984_280 Hb_000504_060 Hb_000504_060 Hb_085600_010--Hb_000504_060 Hb_000531_010--Hb_059502_010 Hb_000531_010--Hb_180864_010 Hb_000531_010--Hb_085600_010 Hb_001242_170--Hb_180864_010 Hb_001242_170--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_001242_170--Hb_000732_200 Hb_001242_170--Hb_000504_060 Hb_000617_160 Hb_000617_160 Hb_001242_170--Hb_000617_160 Hb_180864_010--Hb_000984_280 Hb_180864_010--Hb_000732_200 Hb_004598_020 Hb_004598_020 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.376883 0.413686 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0903694 0

CAGE analysis