Hb_002768_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig2768: 19090-22378
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13450g
description hypothetical protein
nr
ID KDP39145.1
description hypothetical protein JCGZ_00902 [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID A0A067L3R9
description MYB family protein OS=Jatropha curcas GN=JCGZ_00902 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb86-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_020 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
2 Hb_000803_050 0.2203615008 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
3 Hb_000567_280 0.2301978451 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
4 Hb_000282_140 0.2344370421 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
5 Hb_026428_010 0.2471660298 - - copper transport protein ATOX1 [Hevea brasiliensis]
6 Hb_011242_030 0.2482052687 - - -
7 Hb_003050_070 0.2525834049 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007741_040 0.2533464685 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
9 Hb_000235_010 0.2605342954 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
10 Hb_159191_010 0.2660179277 - - protease inhibitor protein [Hevea brasiliensis]
11 Hb_006502_040 0.2664530578 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
12 Hb_000861_050 0.271780916 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
13 Hb_004108_090 0.2730635146 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
14 Hb_003592_070 0.2735946883 - - -
15 Hb_005736_040 0.2796058977 - - -
16 Hb_032660_020 0.2809592574 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
17 Hb_000714_010 0.2810353191 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
18 Hb_000188_130 0.2821099622 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
19 Hb_000641_040 0.2825046175 - - PREDICTED: condensin complex subunit 1 isoform X1 [Jatropha curcas]
20 Hb_084889_010 0.2843159927 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]

Gene co-expression network

sample Hb_002768_020 Hb_002768_020 Hb_000803_050 Hb_000803_050 Hb_002768_020--Hb_000803_050 Hb_000567_280 Hb_000567_280 Hb_002768_020--Hb_000567_280 Hb_000282_140 Hb_000282_140 Hb_002768_020--Hb_000282_140 Hb_026428_010 Hb_026428_010 Hb_002768_020--Hb_026428_010 Hb_011242_030 Hb_011242_030 Hb_002768_020--Hb_011242_030 Hb_003050_070 Hb_003050_070 Hb_002768_020--Hb_003050_070 Hb_000803_050--Hb_026428_010 Hb_000235_010 Hb_000235_010 Hb_000803_050--Hb_000235_010 Hb_000803_050--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000803_050--Hb_011004_010 Hb_001671_060 Hb_001671_060 Hb_000803_050--Hb_001671_060 Hb_000575_020 Hb_000575_020 Hb_000803_050--Hb_000575_020 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_000091_100 Hb_000091_100 Hb_000567_280--Hb_000091_100 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220 Hb_001799_040 Hb_001799_040 Hb_000282_140--Hb_001799_040 Hb_000641_040 Hb_000641_040 Hb_000282_140--Hb_000641_040 Hb_001427_140 Hb_001427_140 Hb_000282_140--Hb_001427_140 Hb_109578_010 Hb_109578_010 Hb_000282_140--Hb_109578_010 Hb_000275_010 Hb_000275_010 Hb_000282_140--Hb_000275_010 Hb_001035_040 Hb_001035_040 Hb_026428_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_026428_010--Hb_007120_070 Hb_000175_610 Hb_000175_610 Hb_026428_010--Hb_000175_610 Hb_000188_130 Hb_000188_130 Hb_026428_010--Hb_000188_130 Hb_000107_070 Hb_000107_070 Hb_026428_010--Hb_000107_070 Hb_002685_180 Hb_002685_180 Hb_011242_030--Hb_002685_180 Hb_019033_010 Hb_019033_010 Hb_011242_030--Hb_019033_010 Hb_000453_210 Hb_000453_210 Hb_011242_030--Hb_000453_210 Hb_001437_050 Hb_001437_050 Hb_011242_030--Hb_001437_050 Hb_000275_130 Hb_000275_130 Hb_011242_030--Hb_000275_130 Hb_001495_060 Hb_001495_060 Hb_011242_030--Hb_001495_060 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003211_050 Hb_003211_050 Hb_003050_070--Hb_003211_050 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.380116 0.0492597 0.339871 0 0.0444126 0.0714195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48583 0.861395 0.193732 0 0.0431662

CAGE analysis