Hb_002768_080

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig2768: 74022-74942
Sequence    

Annotation

kegg
ID rcu:RCOM_0082580
description geranyl geranyl pyrophosphate synthase, putative (EC:2.5.1.29)
nr
ID BAF98300.1
description geranyl-diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q39108
description Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
trembl
ID A9ZN18
description Geranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGPS PE=2 SV=1
Gene Ontology
ID GO:0004161
description heterodimeric geranylgeranyl pyrophosphate synthase small chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_080 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
2 Hb_010614_010 0.1601641514 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_001386_020 0.1655969693 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004800_140 0.1672087634 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
5 Hb_000318_410 0.1682611795 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
6 Hb_005054_320 0.1686989576 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
7 Hb_000594_150 0.1698652089 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
8 Hb_000453_280 0.1703679203 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
9 Hb_004976_080 0.1714798543 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
10 Hb_000035_060 0.1737988507 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
11 Hb_001369_020 0.1759165524 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
12 Hb_183025_010 0.1760739398 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
13 Hb_003106_240 0.1789299433 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
14 Hb_054232_020 0.1798680039 - - Potassium channel SKOR, putative [Ricinus communis]
15 Hb_027402_100 0.1812877322 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
16 Hb_002639_130 0.1858917443 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
17 Hb_002997_110 0.1866635849 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
18 Hb_073171_050 0.1870156085 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
19 Hb_004241_170 0.1881277073 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
20 Hb_000732_160 0.1915926576 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002768_080 Hb_002768_080 Hb_010614_010 Hb_010614_010 Hb_002768_080--Hb_010614_010 Hb_001386_020 Hb_001386_020 Hb_002768_080--Hb_001386_020 Hb_004800_140 Hb_004800_140 Hb_002768_080--Hb_004800_140 Hb_000318_410 Hb_000318_410 Hb_002768_080--Hb_000318_410 Hb_005054_320 Hb_005054_320 Hb_002768_080--Hb_005054_320 Hb_000594_150 Hb_000594_150 Hb_002768_080--Hb_000594_150 Hb_000732_160 Hb_000732_160 Hb_010614_010--Hb_000732_160 Hb_094439_010 Hb_094439_010 Hb_010614_010--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_010614_010--Hb_010904_010 Hb_004241_170 Hb_004241_170 Hb_010614_010--Hb_004241_170 Hb_001631_110 Hb_001631_110 Hb_010614_010--Hb_001631_110 Hb_004767_020 Hb_004767_020 Hb_010614_010--Hb_004767_020 Hb_000086_640 Hb_000086_640 Hb_001386_020--Hb_000086_640 Hb_000753_140 Hb_000753_140 Hb_001386_020--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_001386_020--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001386_020--Hb_000035_490 Hb_002383_050 Hb_002383_050 Hb_001386_020--Hb_002383_050 Hb_011381_070 Hb_011381_070 Hb_001386_020--Hb_011381_070 Hb_004800_140--Hb_004241_170 Hb_002999_130 Hb_002999_130 Hb_004800_140--Hb_002999_130 Hb_008341_010 Hb_008341_010 Hb_004800_140--Hb_008341_010 Hb_000340_380 Hb_000340_380 Hb_004800_140--Hb_000340_380 Hb_004800_140--Hb_001631_110 Hb_004800_140--Hb_000732_160 Hb_000318_410--Hb_000753_140 Hb_033930_010 Hb_033930_010 Hb_000318_410--Hb_033930_010 Hb_000318_410--Hb_132840_020 Hb_000622_210 Hb_000622_210 Hb_000318_410--Hb_000622_210 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000318_410--Hb_000086_640 Hb_010180_050 Hb_010180_050 Hb_005054_320--Hb_010180_050 Hb_004007_210 Hb_004007_210 Hb_005054_320--Hb_004007_210 Hb_010055_020 Hb_010055_020 Hb_005054_320--Hb_010055_020 Hb_019026_040 Hb_019026_040 Hb_005054_320--Hb_019026_040 Hb_183025_010 Hb_183025_010 Hb_005054_320--Hb_183025_010 Hb_000049_290 Hb_000049_290 Hb_005054_320--Hb_000049_290 Hb_000072_240 Hb_000072_240 Hb_000594_150--Hb_000072_240 Hb_004976_080 Hb_004976_080 Hb_000594_150--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000594_150--Hb_019837_010 Hb_000594_150--Hb_002999_130 Hb_004907_070 Hb_004907_070 Hb_000594_150--Hb_004907_070 Hb_000594_150--Hb_010180_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95278 193.415 165.031 28.4012 6.53789 11.539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0516 1.67969 0 37.4622 129.491

CAGE analysis