Hb_002769_040

Information

Type -
Description -
Location Contig2769: 119059-128992
Sequence    

Annotation

kegg
ID rcu:RCOM_1450010
description farnesyl-diphosphate farnesyltransferase, putative (EC:2.5.1.21)
nr
ID XP_002512982.1
description farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
swissprot
ID P53800
description Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1
trembl
ID B9RHC3
description Farnesyl-diphosphate farnesyltransferase, putative OS=Ricinus communis GN=RCOM_1450010 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28947: 119236-129120 , PASA_asmbl_28948: 119534-119732
cDNA
(Sanger)
(ID:Location)		 025_C20.ab1: 119371-125189

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002769_040 0.0 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
2 Hb_003540_140 0.0982261755 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
3 Hb_061256_030 0.1297175136 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_003226_170 0.1321790749 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
5 Hb_002253_110 0.1323334099 - - cysteine desulfurylase, putative [Ricinus communis]
6 Hb_077219_010 0.150382303 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005271_030 0.1571514601 - - copper-transporting atpase p-type, putative [Ricinus communis]
8 Hb_002506_110 0.1573616742 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
9 Hb_011021_030 0.1596581179 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
10 Hb_000856_100 0.1605630904 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
11 Hb_000441_230 0.1625196394 - - unnamed protein product [Coffea canephora]
12 Hb_003360_020 0.1639362931 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
13 Hb_002837_070 0.1661871277 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
14 Hb_009193_130 0.1664686399 - - hypothetical protein RCOM_1620550 [Ricinus communis]
15 Hb_000565_020 0.1693112996 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
16 Hb_074961_010 0.1698626258 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
17 Hb_003673_020 0.1717787428 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
18 Hb_098315_100 0.1721086037 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
19 Hb_000329_540 0.172686543 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
20 Hb_174865_050 0.1746239005 - - PREDICTED: neuroguidin [Jatropha curcas]

Gene co-expression network

sample Hb_002769_040 Hb_002769_040 Hb_003540_140 Hb_003540_140 Hb_002769_040--Hb_003540_140 Hb_061256_030 Hb_061256_030 Hb_002769_040--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_002769_040--Hb_003226_170 Hb_002253_110 Hb_002253_110 Hb_002769_040--Hb_002253_110 Hb_077219_010 Hb_077219_010 Hb_002769_040--Hb_077219_010 Hb_005271_030 Hb_005271_030 Hb_002769_040--Hb_005271_030 Hb_000441_230 Hb_000441_230 Hb_003540_140--Hb_000441_230 Hb_000329_540 Hb_000329_540 Hb_003540_140--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_003540_140--Hb_000156_030 Hb_003540_140--Hb_061256_030 Hb_003540_140--Hb_003226_170 Hb_002837_070 Hb_002837_070 Hb_061256_030--Hb_002837_070 Hb_061256_030--Hb_003226_170 Hb_003673_020 Hb_003673_020 Hb_061256_030--Hb_003673_020 Hb_174865_050 Hb_174865_050 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_003226_170--Hb_003673_020 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_000033_060 Hb_000033_060 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_000117_020 Hb_000117_020 Hb_002253_110--Hb_000117_020 Hb_000565_020 Hb_000565_020 Hb_077219_010--Hb_000565_020 Hb_000085_280 Hb_000085_280 Hb_077219_010--Hb_000085_280 Hb_002290_060 Hb_002290_060 Hb_077219_010--Hb_002290_060 Hb_001252_170 Hb_001252_170 Hb_077219_010--Hb_001252_170 Hb_001477_010 Hb_001477_010 Hb_077219_010--Hb_001477_010 Hb_077219_010--Hb_000856_100 Hb_029464_010 Hb_029464_010 Hb_005271_030--Hb_029464_010 Hb_005271_030--Hb_009193_130 Hb_001146_070 Hb_001146_070 Hb_005271_030--Hb_001146_070 Hb_007158_030 Hb_007158_030 Hb_005271_030--Hb_007158_030 Hb_002506_110 Hb_002506_110 Hb_005271_030--Hb_002506_110 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
294.828 6.23744 24.1807 31.2268 346.02 498.072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.508 7.75778 95.3334 15.2269 16.8872

CAGE analysis