Hb_002769_050

Information

Type -
Description -
Location Contig2769: 130531-135901
Sequence    

Annotation

kegg
ID rcu:RCOM_1450020
description clathrin binding protein, putative
nr
ID XP_012067184.1
description PREDICTED: endophilin-A1 [Jatropha curcas]
swissprot
ID Q8AXV0
description Endophilin-A2 OS=Gallus gallus GN=SH3GL1 PE=1 SV=1
trembl
ID A0A067LB77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26743 PE=4 SV=1
Gene Ontology
ID GO:0005737
description sh3 domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28950: 130503-135874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002769_050 0.0 - - PREDICTED: endophilin-A1 [Jatropha curcas]
2 Hb_005625_020 0.0820113876 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
3 Hb_002687_110 0.083751745 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
4 Hb_001818_090 0.0842299325 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003032_040 0.0891501943 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
6 Hb_000080_190 0.0931673638 - - -
7 Hb_000696_310 0.0943691595 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
8 Hb_061090_010 0.0947404347 - - RAN BINDING protein 1 [Populus trichocarpa]
9 Hb_000041_050 0.0954785439 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_000409_020 0.0969712496 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
11 Hb_009666_040 0.097129717 - - glutathione transferase, putative [Ricinus communis]
12 Hb_008066_010 0.0981286943 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
13 Hb_006922_110 0.098309229 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
14 Hb_000431_010 0.0993893073 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
15 Hb_008695_210 0.1008850598 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
16 Hb_002005_020 0.1021088785 - - conserved hypothetical protein [Ricinus communis]
17 Hb_031862_110 0.1024774247 - - calcium-dependent protein kinase [Hevea brasiliensis]
18 Hb_183086_060 0.1028978541 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
19 Hb_002759_060 0.1037242526 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
20 Hb_022181_020 0.1041303474 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002769_050 Hb_002769_050 Hb_005625_020 Hb_005625_020 Hb_002769_050--Hb_005625_020 Hb_002687_110 Hb_002687_110 Hb_002769_050--Hb_002687_110 Hb_001818_090 Hb_001818_090 Hb_002769_050--Hb_001818_090 Hb_003032_040 Hb_003032_040 Hb_002769_050--Hb_003032_040 Hb_000080_190 Hb_000080_190 Hb_002769_050--Hb_000080_190 Hb_000696_310 Hb_000696_310 Hb_002769_050--Hb_000696_310 Hb_005625_020--Hb_000080_190 Hb_005625_020--Hb_002687_110 Hb_004738_040 Hb_004738_040 Hb_005625_020--Hb_004738_040 Hb_000898_040 Hb_000898_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_002687_110--Hb_004738_040 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_001818_090--Hb_003032_040 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_006400_030 Hb_006400_030 Hb_003032_040--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_003032_040--Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_003032_040--Hb_000483_200 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_000080_190--Hb_000898_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000080_190--Hb_000409_020 Hb_027073_040 Hb_027073_040 Hb_000696_310--Hb_027073_040 Hb_002759_060 Hb_002759_060 Hb_000696_310--Hb_002759_060 Hb_155764_010 Hb_155764_010 Hb_000696_310--Hb_155764_010 Hb_000444_050 Hb_000444_050 Hb_000696_310--Hb_000444_050 Hb_000270_370 Hb_000270_370 Hb_000696_310--Hb_000270_370 Hb_000260_810 Hb_000260_810 Hb_000696_310--Hb_000260_810
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3895 7.85075 13.6062 17.0198 18.8622 41.9559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1286 35.4701 61.4852 24.3622 14.1056

CAGE analysis