Hb_002774_040

Information

Type -
Description -
Location Contig2774: 16901-17517
Sequence    

Annotation

kegg
ID tcc:TCM_034918
description Annexin 1
nr
ID XP_012067858.1
description PREDICTED: annexin D1 [Jatropha curcas]
swissprot
ID Q9LX07
description Annexin D7 OS=Arabidopsis thaliana GN=ANNAT7 PE=2 SV=1
trembl
ID A0A067KYU4
description Annexin OS=Jatropha curcas GN=JCGZ_15778 PE=3 SV=1
Gene Ontology
ID GO:0043231
description annexin d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28960: 16702-17031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_040 0.0 - - PREDICTED: annexin D1 [Jatropha curcas]
2 Hb_006683_030 0.2359104003 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_000050_130 0.2724954134 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
4 Hb_005896_010 0.2853774168 - - -
5 Hb_002675_120 0.2865996104 - - DNA-repair protein xrcc1, putative [Ricinus communis]
6 Hb_000160_100 0.3011861123 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
7 Hb_167300_010 0.3031610331 - - -
8 Hb_001524_020 0.3294417319 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
9 Hb_008749_090 0.3310796233 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
10 Hb_001282_030 0.3352717439 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
11 Hb_078001_010 0.3354215372 - - Uncharacterized protein TCM_000398 [Theobroma cacao]
12 Hb_000067_010 0.3402802273 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
13 Hb_032496_010 0.3414683702 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
14 Hb_031862_030 0.3421889055 - - Cell division cycle protein, putative [Ricinus communis]
15 Hb_001652_110 0.3444675215 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
16 Hb_130194_010 0.3457091087 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
17 Hb_005439_040 0.3468510374 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_005218_040 0.3498688176 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
19 Hb_003117_040 0.3540551166 - - cytochrome P450, putative [Ricinus communis]
20 Hb_006683_010 0.3567170962 - - cell wall invertase [Manihot esculenta]

Gene co-expression network

sample Hb_002774_040 Hb_002774_040 Hb_006683_030 Hb_006683_030 Hb_002774_040--Hb_006683_030 Hb_000050_130 Hb_000050_130 Hb_002774_040--Hb_000050_130 Hb_005896_010 Hb_005896_010 Hb_002774_040--Hb_005896_010 Hb_002675_120 Hb_002675_120 Hb_002774_040--Hb_002675_120 Hb_000160_100 Hb_000160_100 Hb_002774_040--Hb_000160_100 Hb_167300_010 Hb_167300_010 Hb_002774_040--Hb_167300_010 Hb_006683_030--Hb_005896_010 Hb_006683_030--Hb_000160_100 Hb_006683_030--Hb_002675_120 Hb_002656_010 Hb_002656_010 Hb_006683_030--Hb_002656_010 Hb_008749_090 Hb_008749_090 Hb_006683_030--Hb_008749_090 Hb_006683_010 Hb_006683_010 Hb_000050_130--Hb_006683_010 Hb_001652_110 Hb_001652_110 Hb_000050_130--Hb_001652_110 Hb_000050_130--Hb_002675_120 Hb_008779_010 Hb_008779_010 Hb_000050_130--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_000050_130--Hb_008643_010 Hb_054362_010 Hb_054362_010 Hb_000050_130--Hb_054362_010 Hb_005896_010--Hb_002656_010 Hb_159198_010 Hb_159198_010 Hb_005896_010--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_005896_010--Hb_000840_040 Hb_005896_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_005896_010--Hb_003517_010 Hb_002675_120--Hb_006683_010 Hb_002675_120--Hb_000160_100 Hb_002675_120--Hb_001652_110 Hb_002849_150 Hb_002849_150 Hb_002675_120--Hb_002849_150 Hb_000160_100--Hb_006683_010 Hb_000160_100--Hb_002849_150 Hb_002774_010 Hb_002774_010 Hb_000160_100--Hb_002774_010 Hb_041184_010 Hb_041184_010 Hb_000160_100--Hb_041184_010 Hb_001965_010 Hb_001965_010 Hb_167300_010--Hb_001965_010 Hb_001496_030 Hb_001496_030 Hb_167300_010--Hb_001496_030 Hb_002733_030 Hb_002733_030 Hb_167300_010--Hb_002733_030 Hb_004103_030 Hb_004103_030 Hb_167300_010--Hb_004103_030 Hb_003861_020 Hb_003861_020 Hb_167300_010--Hb_003861_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290106 0.104173 0 0 0 0.0887234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.564669 1.18072 0.309385

CAGE analysis