Hb_002774_060

Information

Type -
Description -
Location Contig2774: 26784-28190
Sequence    

Annotation

kegg
ID tcc:TCM_034920
description Uncharacterized protein isoform 1
nr
ID XP_012067856.1
description PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FH13
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_034920 PE=4 SV=1
Gene Ontology
ID GO:0003723
description n-lysine methyltransferase see1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28962: 26536-40594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_060 0.0 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
2 Hb_000045_090 0.0548451158 - - PREDICTED: syntaxin-31 [Jatropha curcas]
3 Hb_000329_030 0.0561658927 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
4 Hb_000656_040 0.0667818069 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
5 Hb_004324_310 0.0672782061 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010172_080 0.0708132851 - - acetylglucosaminyltransferase, putative [Ricinus communis]
7 Hb_032208_090 0.0723563823 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
8 Hb_009557_070 0.0762165307 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004545_060 0.0762422808 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
10 Hb_000451_010 0.0767311919 - - secretory carrier membrane protein, putative [Ricinus communis]
11 Hb_002078_150 0.0783224909 - - protein with unknown function [Ricinus communis]
12 Hb_003929_160 0.0787234981 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
13 Hb_005686_060 0.0787535604 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
14 Hb_000618_040 0.0787685137 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
15 Hb_003001_120 0.0788428891 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
16 Hb_000363_500 0.0795522013 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
17 Hb_007416_280 0.0803021876 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011689_080 0.0822520623 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
19 Hb_010180_020 0.0826344312 - - hypothetical protein glysoja_030394 [Glycine soja]
20 Hb_009773_020 0.0827258329 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]

Gene co-expression network

sample Hb_002774_060 Hb_002774_060 Hb_000045_090 Hb_000045_090 Hb_002774_060--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_002774_060--Hb_000329_030 Hb_000656_040 Hb_000656_040 Hb_002774_060--Hb_000656_040 Hb_004324_310 Hb_004324_310 Hb_002774_060--Hb_004324_310 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_032208_090 Hb_032208_090 Hb_002774_060--Hb_032208_090 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000045_090--Hb_000329_030 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_000329_030--Hb_009557_070 Hb_000329_030--Hb_000656_040 Hb_000329_030--Hb_143398_010 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140 Hb_000656_040--Hb_032208_090 Hb_000656_040--Hb_000579_140 Hb_000656_040--Hb_000045_090 Hb_002998_060 Hb_002998_060 Hb_000656_040--Hb_002998_060 Hb_011689_080 Hb_011689_080 Hb_004324_310--Hb_011689_080 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002105_090 Hb_002105_090 Hb_004324_310--Hb_002105_090 Hb_001377_290 Hb_001377_290 Hb_004324_310--Hb_001377_290 Hb_010172_080--Hb_005686_060 Hb_009773_020 Hb_009773_020 Hb_010172_080--Hb_009773_020 Hb_010172_080--Hb_002078_150 Hb_004705_100 Hb_004705_100 Hb_010172_080--Hb_004705_100 Hb_010172_080--Hb_004324_310 Hb_001009_270 Hb_001009_270 Hb_032208_090--Hb_001009_270 Hb_032208_090--Hb_000579_140 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.2678 23.6456 32.9242 52.7596 51.7946 83.3167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.2928 65.5645 73.1028 28.3467 17.8136

CAGE analysis