Hb_002774_070

Information

Type -
Description -
Location Contig2774: 36379-41164
Sequence    

Annotation

kegg
ID mdm:103401421
description uncharacterized LOC103401421
nr
ID KCW66501.1
description hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M1BI15
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017722 PE=4 SV=1
Gene Ontology
ID GO:0003723
description PREDICTED: uncharacterized protein LOC105630599 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28962: 26536-40594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_070 0.0 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
2 Hb_009411_020 0.0673402281 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
3 Hb_000156_140 0.0728554568 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
4 Hb_005432_010 0.0874347702 - - -
5 Hb_033312_140 0.0935445573 - - RNA and export factor-binding family protein [Populus trichocarpa]
6 Hb_002475_050 0.0943482614 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
7 Hb_000749_150 0.0965103535 - - -
8 Hb_109842_010 0.0966754515 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
9 Hb_000390_060 0.0978428398 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
10 Hb_000204_040 0.0980531836 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
11 Hb_004198_010 0.0985640306 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
12 Hb_000230_330 0.0988667682 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
13 Hb_023001_050 0.1030739982 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
14 Hb_024714_020 0.1036903688 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_003434_060 0.1042988677 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
16 Hb_004204_200 0.1056741194 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
17 Hb_010222_030 0.1065914655 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
18 Hb_000120_500 0.1072978774 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
19 Hb_173178_020 0.1086677455 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
20 Hb_000197_210 0.1088342638 - - phosphatidylinositol transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002774_070 Hb_002774_070 Hb_009411_020 Hb_009411_020 Hb_002774_070--Hb_009411_020 Hb_000156_140 Hb_000156_140 Hb_002774_070--Hb_000156_140 Hb_005432_010 Hb_005432_010 Hb_002774_070--Hb_005432_010 Hb_033312_140 Hb_033312_140 Hb_002774_070--Hb_033312_140 Hb_002475_050 Hb_002475_050 Hb_002774_070--Hb_002475_050 Hb_000749_150 Hb_000749_150 Hb_002774_070--Hb_000749_150 Hb_009411_020--Hb_000156_140 Hb_001616_090 Hb_001616_090 Hb_009411_020--Hb_001616_090 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_009411_020--Hb_000186_280 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_000175_390 Hb_000175_390 Hb_000156_140--Hb_000175_390 Hb_004204_200 Hb_004204_200 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020 Hb_000204_040 Hb_000204_040 Hb_005432_010--Hb_000204_040 Hb_004944_010 Hb_004944_010 Hb_005432_010--Hb_004944_010 Hb_000349_060 Hb_000349_060 Hb_005432_010--Hb_000349_060 Hb_005432_010--Hb_000165_030 Hb_109842_010 Hb_109842_010 Hb_005432_010--Hb_109842_010 Hb_041392_010 Hb_041392_010 Hb_033312_140--Hb_041392_010 Hb_150204_010 Hb_150204_010 Hb_033312_140--Hb_150204_010 Hb_004198_010 Hb_004198_010 Hb_033312_140--Hb_004198_010 Hb_003656_140 Hb_003656_140 Hb_033312_140--Hb_003656_140 Hb_003434_060 Hb_003434_060 Hb_033312_140--Hb_003434_060 Hb_000372_040 Hb_000372_040 Hb_002475_050--Hb_000372_040 Hb_079326_010 Hb_079326_010 Hb_002475_050--Hb_079326_010 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_004881_050 Hb_004881_050 Hb_002475_050--Hb_004881_050 Hb_002739_080 Hb_002739_080 Hb_002475_050--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_002475_050--Hb_005000_270 Hb_000749_150--Hb_004204_200 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000749_150--Hb_000165_030 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.3623 25.9902 26.5715 38.8926 84.2878 140.16
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9443 43.4964 46.5086 15.1376 12.9624

CAGE analysis