Hb_002774_090

Information

Type -
Description -
Location Contig2774: 78450-79748
Sequence    

Annotation

kegg
ID rcu:RCOM_1034940
description hypothetical protein
nr
ID XP_002513906.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1034940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28968: 80139-80412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003504_040 0.1381021993 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
3 Hb_044724_010 0.1553154023 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
4 Hb_005779_040 0.1742733818 - - -
5 Hb_002805_300 0.2139706923 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Jatropha curcas]
6 Hb_001318_130 0.2203082234 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
7 Hb_067034_030 0.2229665972 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_004410_150 0.2237073108 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
9 Hb_000685_060 0.224406703 - - ring finger protein, putative [Ricinus communis]
10 Hb_000679_240 0.232256754 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
11 Hb_008616_060 0.2343663891 - - syntaxin, putative [Ricinus communis]
12 Hb_000589_220 0.2413908524 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000997_110 0.2438084217 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
14 Hb_003371_140 0.2440334432 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
15 Hb_020805_170 0.2463833498 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_003052_200 0.2467933604 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
17 Hb_005147_040 0.2487500755 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
18 Hb_003894_100 0.2492876363 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
19 Hb_013818_040 0.2504169365 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
20 Hb_003371_120 0.2521129639 - - hypothetical protein JCGZ_05278 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_090 Hb_002774_090 Hb_003504_040 Hb_003504_040 Hb_002774_090--Hb_003504_040 Hb_044724_010 Hb_044724_010 Hb_002774_090--Hb_044724_010 Hb_005779_040 Hb_005779_040 Hb_002774_090--Hb_005779_040 Hb_002805_300 Hb_002805_300 Hb_002774_090--Hb_002805_300 Hb_001318_130 Hb_001318_130 Hb_002774_090--Hb_001318_130 Hb_067034_030 Hb_067034_030 Hb_002774_090--Hb_067034_030 Hb_000685_060 Hb_000685_060 Hb_003504_040--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_003504_040--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_003504_040--Hb_005157_010 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060 Hb_007259_040 Hb_007259_040 Hb_044724_010--Hb_007259_040 Hb_044724_010--Hb_005779_040 Hb_004410_150 Hb_004410_150 Hb_044724_010--Hb_004410_150 Hb_003894_100 Hb_003894_100 Hb_044724_010--Hb_003894_100 Hb_044724_010--Hb_003504_040 Hb_000589_220 Hb_000589_220 Hb_005779_040--Hb_000589_220 Hb_005779_040--Hb_003894_100 Hb_000679_240 Hb_000679_240 Hb_005779_040--Hb_000679_240 Hb_005779_040--Hb_067034_030 Hb_002805_300--Hb_004410_150 Hb_001625_010 Hb_001625_010 Hb_002805_300--Hb_001625_010 Hb_003398_070 Hb_003398_070 Hb_002805_300--Hb_003398_070 Hb_000270_350 Hb_000270_350 Hb_002805_300--Hb_000270_350 Hb_000866_370 Hb_000866_370 Hb_002805_300--Hb_000866_370 Hb_000002_270 Hb_000002_270 Hb_002805_300--Hb_000002_270 Hb_006198_170 Hb_006198_170 Hb_001318_130--Hb_006198_170 Hb_012055_100 Hb_012055_100 Hb_001318_130--Hb_012055_100 Hb_001318_130--Hb_003504_040 Hb_001863_100 Hb_001863_100 Hb_001318_130--Hb_001863_100 Hb_006198_140 Hb_006198_140 Hb_001318_130--Hb_006198_140 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_067034_030--Hb_000679_240 Hb_006501_170 Hb_006501_170 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_000521_300 Hb_000521_300 Hb_067034_030--Hb_000521_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2207 94.0619 2.15859 18.0671 0.75632 1.70173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0596 7.26194 0.488209 44.6672 7.12357

CAGE analysis