Hb_002774_130

Information

Type -
Description -
Location Contig2774: 118550-118801
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_130 0.0 - - -
2 Hb_000281_170 0.0603241894 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_046117_040 0.0640117045 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
4 Hb_000117_170 0.1074443292 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
5 Hb_000849_110 0.1156889648 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
6 Hb_126907_010 0.1485949298 - - -
7 Hb_084611_010 0.1671494077 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
8 Hb_150998_010 0.1724508558 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_001687_050 0.1855023415 - - -
10 Hb_006216_010 0.1878289444 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
11 Hb_000862_020 0.1966750021 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
12 Hb_003851_050 0.2086202293 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_021901_010 0.2378503941 - - -
14 Hb_008221_010 0.2427060881 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
15 Hb_008953_020 0.2427300293 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
16 Hb_000135_040 0.242732865 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
17 Hb_013654_020 0.2427486719 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
18 Hb_048653_010 0.2427513792 - - PREDICTED: mavicyanin [Jatropha curcas]
19 Hb_042239_010 0.24277884 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_000370_050 0.2429177548 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_002774_130 Hb_002774_130 Hb_000281_170 Hb_000281_170 Hb_002774_130--Hb_000281_170 Hb_046117_040 Hb_046117_040 Hb_002774_130--Hb_046117_040 Hb_000117_170 Hb_000117_170 Hb_002774_130--Hb_000117_170 Hb_000849_110 Hb_000849_110 Hb_002774_130--Hb_000849_110 Hb_126907_010 Hb_126907_010 Hb_002774_130--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_002774_130--Hb_084611_010 Hb_000281_170--Hb_046117_040 Hb_000281_170--Hb_000117_170 Hb_000281_170--Hb_000849_110 Hb_000281_170--Hb_126907_010 Hb_000281_170--Hb_084611_010 Hb_046117_040--Hb_000117_170 Hb_046117_040--Hb_126907_010 Hb_150998_010 Hb_150998_010 Hb_046117_040--Hb_150998_010 Hb_046117_040--Hb_000849_110 Hb_000117_170--Hb_126907_010 Hb_000117_170--Hb_000849_110 Hb_000117_170--Hb_084611_010 Hb_000849_110--Hb_084611_010 Hb_000849_110--Hb_126907_010 Hb_126907_010--Hb_084611_010 Hb_126907_010--Hb_150998_010 Hb_084611_010--Hb_046117_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.47729 0 0 0 0.274837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.68153 0

CAGE analysis