Hb_002774_200

Information

Type transcription factor
Description TF Family: ERF
Location Contig2774: 177179-178285
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16690g
description POPTRDRAFT_801219; hypothetical protein
nr
ID XP_012092758.1
description PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
swissprot
ID Q8H1E4
description Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1
trembl
ID K9UTK3
description Ethylene-responsive element binding-factor OS=Jatropha curcas GN=ERF PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28977: 177049-178790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_200 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
2 Hb_002876_210 0.0958251534 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
3 Hb_002259_170 0.1098072628 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
4 Hb_002217_090 0.1105139239 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
5 Hb_000711_010 0.1130497962 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
6 Hb_004774_020 0.1265856685 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
7 Hb_011310_150 0.1269366876 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
8 Hb_000452_030 0.1278750226 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
9 Hb_002965_050 0.1290753239 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
10 Hb_002900_120 0.1308093391 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
11 Hb_001500_030 0.1308449399 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
12 Hb_000656_390 0.1309141412 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
13 Hb_009288_010 0.1329194968 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_001160_100 0.1354064316 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
15 Hb_023344_110 0.1362897551 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
16 Hb_001269_370 0.1377361411 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
17 Hb_006970_050 0.1383903131 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
18 Hb_000015_090 0.138844075 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
19 Hb_002686_230 0.139833005 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_010661_010 0.1414943562 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_200 Hb_002774_200 Hb_002876_210 Hb_002876_210 Hb_002774_200--Hb_002876_210 Hb_002259_170 Hb_002259_170 Hb_002774_200--Hb_002259_170 Hb_002217_090 Hb_002217_090 Hb_002774_200--Hb_002217_090 Hb_000711_010 Hb_000711_010 Hb_002774_200--Hb_000711_010 Hb_004774_020 Hb_004774_020 Hb_002774_200--Hb_004774_020 Hb_011310_150 Hb_011310_150 Hb_002774_200--Hb_011310_150 Hb_002965_050 Hb_002965_050 Hb_002876_210--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000711_010 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002876_210--Hb_002217_090 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_002259_170--Hb_000452_030 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_001511_090 Hb_001511_090 Hb_002259_170--Hb_001511_090 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_001500_030 Hb_001500_030 Hb_002217_090--Hb_001500_030 Hb_004128_030 Hb_004128_030 Hb_002217_090--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_003747_210 Hb_003747_210 Hb_002217_090--Hb_003747_210 Hb_002217_090--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_000711_010--Hb_002965_050 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_000711_010--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_000711_010--Hb_060094_010 Hb_003925_040 Hb_003925_040 Hb_004774_020--Hb_003925_040 Hb_002042_170 Hb_002042_170 Hb_004774_020--Hb_002042_170 Hb_004774_020--Hb_002900_120 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_166876_010 Hb_166876_010 Hb_011310_150--Hb_166876_010 Hb_001160_100 Hb_001160_100 Hb_011310_150--Hb_001160_100 Hb_011310_150--Hb_002259_170 Hb_011310_150--Hb_001269_370 Hb_011310_150--Hb_000506_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8366 161.776 84.419 103.796 7.61856 25.2368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2979 56.8043 46.9051 37.0025 110.481

CAGE analysis