Hb_002779_020

Information

Type -
Description -
Location Contig2779: 27919-28702
Sequence    

Annotation

kegg
ID rcu:RCOM_0351480
description transcription factor, putative
nr
ID XP_002532630.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O23659
description B3 domain-containing protein At2g33720 OS=Arabidopsis thaliana GN=At2g33720 PE=2 SV=1
trembl
ID B9T311
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0351480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002779_020 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_115350_010 0.000451143 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
3 Hb_136696_010 0.0008380605 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_061390_010 0.0019937252 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_008880_010 0.0021233452 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
6 Hb_068804_160 0.0135531687 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
7 Hb_004304_050 0.1301015465 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_005183_160 0.1345681774 - - -
9 Hb_003918_040 0.1409096196 - - -
10 Hb_001798_050 0.1835979436 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
11 Hb_001824_060 0.2971572641 - - -
12 Hb_000215_170 0.3081702745 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
13 Hb_000011_170 0.3150526952 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
14 Hb_010504_010 0.3400115496 - - 40S ribosomal protein S15C [Hevea brasiliensis]
15 Hb_153231_040 0.3545689918 - - -
16 Hb_004631_120 0.3761325846 - - conserved hypothetical protein [Ricinus communis]
17 Hb_102438_010 0.3833330289 - - -
18 Hb_002307_130 0.4036919205 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004958_030 0.4096363481 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
20 Hb_003368_130 0.4128258715 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_002779_020 Hb_002779_020 Hb_115350_010 Hb_115350_010 Hb_002779_020--Hb_115350_010 Hb_136696_010 Hb_136696_010 Hb_002779_020--Hb_136696_010 Hb_061390_010 Hb_061390_010 Hb_002779_020--Hb_061390_010 Hb_008880_010 Hb_008880_010 Hb_002779_020--Hb_008880_010 Hb_068804_160 Hb_068804_160 Hb_002779_020--Hb_068804_160 Hb_004304_050 Hb_004304_050 Hb_002779_020--Hb_004304_050 Hb_115350_010--Hb_136696_010 Hb_115350_010--Hb_061390_010 Hb_115350_010--Hb_008880_010 Hb_115350_010--Hb_068804_160 Hb_115350_010--Hb_004304_050 Hb_136696_010--Hb_061390_010 Hb_136696_010--Hb_008880_010 Hb_136696_010--Hb_068804_160 Hb_136696_010--Hb_004304_050 Hb_061390_010--Hb_008880_010 Hb_061390_010--Hb_068804_160 Hb_061390_010--Hb_004304_050 Hb_008880_010--Hb_068804_160 Hb_008880_010--Hb_004304_050 Hb_068804_160--Hb_004304_050 Hb_005183_160 Hb_005183_160 Hb_004304_050--Hb_005183_160 Hb_003918_040 Hb_003918_040 Hb_004304_050--Hb_003918_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0322504 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0739905 0 0 0 0

CAGE analysis