Hb_002780_010

Information

Type -
Description -
Location Contig2780: 31323-38496
Sequence    

Annotation

kegg
ID rcu:RCOM_0804080
description hypothetical protein
nr
ID XP_012078606.1
description PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13200 PE=4 SV=1
Gene Ontology
ID GO:0035194
description enhancer of polycomb-like transcription factor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29006: 35165-38472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002780_010 0.0 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
2 Hb_002007_160 0.0737927708 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
3 Hb_009898_010 0.0738725417 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
4 Hb_009767_080 0.0764093026 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
5 Hb_000321_150 0.0800526387 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
6 Hb_000260_070 0.0802224123 - - kinase, putative [Ricinus communis]
7 Hb_001268_380 0.080468305 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
8 Hb_004705_020 0.0835558081 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
9 Hb_000599_190 0.0835772044 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
10 Hb_002316_160 0.0851410002 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
11 Hb_000866_120 0.0868034214 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
12 Hb_005486_030 0.0872406742 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
13 Hb_000130_490 0.0888001475 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
14 Hb_002311_100 0.0903281323 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
15 Hb_007575_080 0.0903939926 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
16 Hb_005656_040 0.0907745555 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_013358_010 0.0913449774 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
18 Hb_003729_030 0.0952907468 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_008053_040 0.0969153717 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
20 Hb_000189_110 0.098553743 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002780_010 Hb_002780_010 Hb_002007_160 Hb_002007_160 Hb_002780_010--Hb_002007_160 Hb_009898_010 Hb_009898_010 Hb_002780_010--Hb_009898_010 Hb_009767_080 Hb_009767_080 Hb_002780_010--Hb_009767_080 Hb_000321_150 Hb_000321_150 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_001268_380 Hb_001268_380 Hb_002780_010--Hb_001268_380 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_009898_010--Hb_009767_080 Hb_002311_100 Hb_002311_100 Hb_009898_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_009898_010--Hb_002316_160 Hb_005486_030 Hb_005486_030 Hb_009898_010--Hb_005486_030 Hb_005656_040 Hb_005656_040 Hb_009898_010--Hb_005656_040 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_000260_070--Hb_003729_030 Hb_013358_010 Hb_013358_010 Hb_000260_070--Hb_013358_010 Hb_000260_070--Hb_000321_150 Hb_000174_290 Hb_000174_290 Hb_000260_070--Hb_000174_290 Hb_000094_310 Hb_000094_310 Hb_000260_070--Hb_000094_310 Hb_004228_020 Hb_004228_020 Hb_001268_380--Hb_004228_020 Hb_001268_380--Hb_009767_080 Hb_001268_380--Hb_000890_050 Hb_001268_380--Hb_005486_030 Hb_001268_380--Hb_002007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16073 22.1258 3.99079 7.89243 7.63851 9.98155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68955 4.83339 14.2087 10.2223 13.5862

CAGE analysis