Hb_002780_050

Information

Type -
Description -
Location Contig2780: 96119-96394
Sequence    

Annotation

kegg
ID fve:101296739
description uncharacterized protein LOC101296739
nr
ID XP_011088310.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A0A0D9WWX6
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0008270
description swim zinc finger family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002780_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
2 Hb_005616_030 0.1609888114 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
3 Hb_000001_120 0.1979520054 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
4 Hb_053373_010 0.2045401562 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_028285_030 0.2049959753 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
6 Hb_128524_010 0.2150846561 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
7 Hb_008864_060 0.2172526764 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
8 Hb_001959_260 0.2206112837 - - -
9 Hb_032660_020 0.2207528295 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
10 Hb_009038_010 0.2219568273 - - latex cystatin [Hevea brasiliensis]
11 Hb_001780_070 0.2415187469 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
12 Hb_000567_280 0.2439890714 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
13 Hb_135585_010 0.2491936831 - - -
14 Hb_000250_010 0.2577267924 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
15 Hb_003050_070 0.2596785463 - - conserved hypothetical protein [Ricinus communis]
16 Hb_159191_010 0.2621959577 - - protease inhibitor protein [Hevea brasiliensis]
17 Hb_000501_020 0.2630177947 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
18 Hb_012799_020 0.2661448662 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_006502_040 0.2668471223 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
20 Hb_000235_010 0.2688434348 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]

Gene co-expression network

sample Hb_002780_050 Hb_002780_050 Hb_005616_030 Hb_005616_030 Hb_002780_050--Hb_005616_030 Hb_000001_120 Hb_000001_120 Hb_002780_050--Hb_000001_120 Hb_053373_010 Hb_053373_010 Hb_002780_050--Hb_053373_010 Hb_028285_030 Hb_028285_030 Hb_002780_050--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002780_050--Hb_128524_010 Hb_008864_060 Hb_008864_060 Hb_002780_050--Hb_008864_060 Hb_005616_030--Hb_008864_060 Hb_001780_070 Hb_001780_070 Hb_005616_030--Hb_001780_070 Hb_000617_290 Hb_000617_290 Hb_005616_030--Hb_000617_290 Hb_001959_260 Hb_001959_260 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_009038_010 Hb_009038_010 Hb_000001_120--Hb_009038_010 Hb_000001_120--Hb_053373_010 Hb_000001_120--Hb_028285_030 Hb_000001_120--Hb_005616_030 Hb_000120_360 Hb_000120_360 Hb_000001_120--Hb_000120_360 Hb_000130_030 Hb_000130_030 Hb_053373_010--Hb_000130_030 Hb_135585_010 Hb_135585_010 Hb_053373_010--Hb_135585_010 Hb_053373_010--Hb_128524_010 Hb_053373_010--Hb_028285_030 Hb_028285_030--Hb_128524_010 Hb_002245_040 Hb_002245_040 Hb_028285_030--Hb_002245_040 Hb_028285_030--Hb_000120_360 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_128524_010--Hb_002245_040 Hb_000792_120 Hb_000792_120 Hb_128524_010--Hb_000792_120 Hb_128524_010--Hb_135585_010 Hb_128524_010--Hb_000453_300 Hb_000250_010 Hb_000250_010 Hb_008864_060--Hb_000250_010 Hb_008864_060--Hb_001959_260 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398623 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2675 1.10584 0.500093 0.172018 0

CAGE analysis