Hb_002781_020

Information

Type -
Description -
Location Contig2781: 15904-19415
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24370g
description POPTRDRAFT_816903; BSD domain-containing family protein
nr
ID XP_012085114.1
description PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29020: 15901-18444 , PASA_asmbl_29021: 19057-19331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002781_020 0.0 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
2 Hb_000634_050 0.067226876 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
3 Hb_008847_020 0.0674078114 - - 40S ribosomal protein S17C [Hevea brasiliensis]
4 Hb_010172_030 0.073585249 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
5 Hb_000161_050 0.0795977198 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000362_210 0.0846067435 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
7 Hb_000045_190 0.0880646906 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
8 Hb_010883_150 0.09083618 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
9 Hb_001123_120 0.091584588 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
10 Hb_000526_150 0.0978912901 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
11 Hb_003086_100 0.0982749987 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
12 Hb_000212_260 0.0985940587 - - acyl-carrier-protein [Triadica sebifera]
13 Hb_007021_020 0.0991546482 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
14 Hb_000028_400 0.1002554115 - - Protein SSU72, putative [Ricinus communis]
15 Hb_000479_180 0.100995484 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012265_010 0.1011640438 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
17 Hb_002571_020 0.1012308669 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
18 Hb_001153_080 0.1018203041 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
19 Hb_034585_040 0.1019906456 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
20 Hb_001045_080 0.1028693814 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]

Gene co-expression network

sample Hb_002781_020 Hb_002781_020 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_010883_150 Hb_010883_150 Hb_008847_020--Hb_010883_150 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_008847_020--Hb_000526_150 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_001153_080 Hb_001153_080 Hb_000161_050--Hb_001153_080 Hb_000161_050--Hb_000212_260 Hb_011689_050 Hb_011689_050 Hb_000161_050--Hb_011689_050 Hb_000161_050--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000161_050--Hb_009851_100 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000362_210--Hb_000634_050 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.39 5.32867 5.56763 10.0649 21.9472 41.9086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.2242 96.5497 33.5733 15.3924 6.24615

CAGE analysis