Hb_002781_040

Information

Type -
Description -
Location Contig2781: 39255-40236
Sequence    

Annotation

kegg
ID rcu:RCOM_1720380
description hypothetical protein
nr
ID XP_002521097.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S528
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1720380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002781_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005542_070 0.0599375093 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
3 Hb_012368_050 0.0669463651 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005542_120 0.105983795 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
5 Hb_000103_070 0.1118422884 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
6 Hb_000003_280 0.1145044407 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001117_050 0.1147129002 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
8 Hb_010164_030 0.1175732621 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
9 Hb_003893_180 0.118187145 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
10 Hb_002233_160 0.1196184742 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
11 Hb_003054_070 0.1229162735 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
12 Hb_003466_010 0.1234268665 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
13 Hb_000230_410 0.1243407228 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
14 Hb_012132_050 0.1250816502 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
15 Hb_178049_010 0.1263896726 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_000160_250 0.1272302668 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
17 Hb_000392_110 0.1279239625 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_004032_290 0.1287886833 - - protein binding protein, putative [Ricinus communis]
19 Hb_007659_050 0.1288981338 - - PREDICTED: xylogen-like protein 11 [Jatropha curcas]
20 Hb_006788_110 0.1295525187 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002781_040 Hb_002781_040 Hb_005542_070 Hb_005542_070 Hb_002781_040--Hb_005542_070 Hb_012368_050 Hb_012368_050 Hb_002781_040--Hb_012368_050 Hb_005542_120 Hb_005542_120 Hb_002781_040--Hb_005542_120 Hb_000103_070 Hb_000103_070 Hb_002781_040--Hb_000103_070 Hb_000003_280 Hb_000003_280 Hb_002781_040--Hb_000003_280 Hb_001117_050 Hb_001117_050 Hb_002781_040--Hb_001117_050 Hb_005542_070--Hb_012368_050 Hb_002233_160 Hb_002233_160 Hb_005542_070--Hb_002233_160 Hb_003893_180 Hb_003893_180 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_005542_070--Hb_000103_070 Hb_012368_050--Hb_005542_120 Hb_012368_050--Hb_002233_160 Hb_000903_040 Hb_000903_040 Hb_012368_050--Hb_000903_040 Hb_006788_110 Hb_006788_110 Hb_012368_050--Hb_006788_110 Hb_005542_120--Hb_001117_050 Hb_000878_050 Hb_000878_050 Hb_005542_120--Hb_000878_050 Hb_011918_070 Hb_011918_070 Hb_005542_120--Hb_011918_070 Hb_000392_110 Hb_000392_110 Hb_005542_120--Hb_000392_110 Hb_001396_030 Hb_001396_030 Hb_005542_120--Hb_001396_030 Hb_005542_120--Hb_000003_280 Hb_002600_120 Hb_002600_120 Hb_000103_070--Hb_002600_120 Hb_000103_070--Hb_000003_280 Hb_000103_070--Hb_003893_180 Hb_006002_050 Hb_006002_050 Hb_000103_070--Hb_006002_050 Hb_000103_070--Hb_006788_110 Hb_000003_280--Hb_000878_050 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_053264_010 Hb_053264_010 Hb_000003_280--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_001117_050--Hb_000392_110 Hb_008221_200 Hb_008221_200 Hb_001117_050--Hb_008221_200 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.212968 0.621647 1.49356 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0442024 0 0.124696 0.629034

CAGE analysis