Hb_002783_020

Information

Type -
Description -
Location Contig2783: 11242-16135
Sequence    

Annotation

kegg
ID rcu:RCOM_1598440
description calcium lipid binding protein, putative
nr
ID XP_012073771.1
description PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
swissprot
ID B6ETT4
description Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1
trembl
ID B9R8B6
description Calcium lipid binding protein, putative OS=Ricinus communis GN=RCOM_1598440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29026: 11394-11651 , PASA_asmbl_29027: 13125-14368 , PASA_asmbl_29028: 13125-14221 , PASA_asmbl_29029: 15108-15571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_020 0.0 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
2 Hb_149838_010 0.1050930832 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
3 Hb_000260_140 0.1122353076 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
4 Hb_027402_090 0.1404168441 - - endonuclease, putative [Ricinus communis]
5 Hb_002708_020 0.1506329204 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
6 Hb_002686_330 0.1547075802 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
7 Hb_004176_060 0.1611763919 - - -
8 Hb_005527_080 0.1647123551 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
9 Hb_000160_150 0.1716416094 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
10 Hb_012184_050 0.2008544875 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
11 Hb_063409_020 0.2056095236 - - Calcium-binding protein, putative [Ricinus communis]
12 Hb_006816_330 0.2063024122 - - exonuclease, putative [Ricinus communis]
13 Hb_000265_220 0.207720452 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
14 Hb_054436_010 0.2080653714 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
15 Hb_002596_030 0.2087703218 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
16 Hb_000024_070 0.209360622 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
17 Hb_000169_190 0.2097099552 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
18 Hb_003216_120 0.2116845398 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
19 Hb_005695_060 0.2119558968 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
20 Hb_003992_030 0.2121531176 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]

Gene co-expression network

sample Hb_002783_020 Hb_002783_020 Hb_149838_010 Hb_149838_010 Hb_002783_020--Hb_149838_010 Hb_000260_140 Hb_000260_140 Hb_002783_020--Hb_000260_140 Hb_027402_090 Hb_027402_090 Hb_002783_020--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_002783_020--Hb_002708_020 Hb_002686_330 Hb_002686_330 Hb_002783_020--Hb_002686_330 Hb_004176_060 Hb_004176_060 Hb_002783_020--Hb_004176_060 Hb_149838_010--Hb_000260_140 Hb_149838_010--Hb_027402_090 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_149838_010--Hb_002686_330 Hb_005527_080 Hb_005527_080 Hb_000260_140--Hb_005527_080 Hb_000260_140--Hb_002708_020 Hb_000260_140--Hb_004176_060 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_027402_090--Hb_000265_220 Hb_027402_090--Hb_002708_020 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190 Hb_002708_020--Hb_000160_150 Hb_002708_020--Hb_002686_330 Hb_008246_030 Hb_008246_030 Hb_002708_020--Hb_008246_030 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_002686_330--Hb_027402_090 Hb_000024_070 Hb_000024_070 Hb_002686_330--Hb_000024_070 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_004176_060--Hb_149838_010 Hb_004176_060--Hb_027402_090 Hb_008725_140 Hb_008725_140 Hb_004176_060--Hb_008725_140 Hb_002596_030 Hb_002596_030 Hb_004176_060--Hb_002596_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8054 5.01151 25.154 3.52786 26.1585 17.7805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13596 1.52454 0.644643 0.735041 6.25273

CAGE analysis