Hb_002783_040

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2783: 43040-49430
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29033: 40330-46689 , PASA_asmbl_29034: 46692-49410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_040 0.0 transcription factor TF Family: IWS1 -
2 Hb_002234_170 0.0553349289 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
3 Hb_002798_070 0.062187227 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
4 Hb_000061_030 0.0651089872 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
5 Hb_002253_080 0.0664404176 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
6 Hb_009150_020 0.0672721765 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
7 Hb_001322_130 0.0691832067 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
8 Hb_002263_040 0.0744411475 - - carbon catabolite repressor protein, putative [Ricinus communis]
9 Hb_000574_400 0.0751200133 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
10 Hb_006117_080 0.0756878653 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
11 Hb_002329_020 0.0760267057 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_000120_130 0.0762708312 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
13 Hb_000866_460 0.0778882377 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
14 Hb_003494_020 0.0780672216 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
15 Hb_000049_260 0.0788777614 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_002267_140 0.0789284967 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
17 Hb_002235_300 0.0790406305 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
18 Hb_000684_250 0.0799450594 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
19 Hb_000015_170 0.0807963444 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000977_120 0.0811543512 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_040 Hb_002783_040 Hb_002234_170 Hb_002234_170 Hb_002783_040--Hb_002234_170 Hb_002798_070 Hb_002798_070 Hb_002783_040--Hb_002798_070 Hb_000061_030 Hb_000061_030 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_002329_020 Hb_002329_020 Hb_000061_030--Hb_002329_020 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_002263_040 Hb_002263_040 Hb_000061_030--Hb_002263_040 Hb_006275_020 Hb_006275_020 Hb_000061_030--Hb_006275_020 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_006117_080 Hb_006117_080 Hb_009150_020--Hb_006117_080 Hb_001279_120 Hb_001279_120 Hb_009150_020--Hb_001279_120 Hb_003470_080 Hb_003470_080 Hb_009150_020--Hb_003470_080 Hb_009150_020--Hb_002798_070 Hb_000069_470 Hb_000069_470 Hb_009150_020--Hb_000069_470 Hb_001322_130--Hb_031042_050 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210 Hb_019430_020 Hb_019430_020 Hb_001322_130--Hb_019430_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2745 21.3991 9.58891 9.33895 11.5701 13.0149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47318 9.92375 14.3042 6.88141 14.4904

CAGE analysis