Hb_002783_070

Information

Type -
Description -
Location Contig2783: 73254-78942
Sequence    

Annotation

kegg
ID rcu:RCOM_1598250
description endoplasmin, putative
nr
ID XP_012073780.1
description PREDICTED: endoplasmin homolog [Jatropha curcas]
swissprot
ID P35016
description Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1
trembl
ID A0A067KPG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08199 PE=3 SV=1
Gene Ontology
ID GO:0005634
description endoplasmin homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29038: 73259-78913 , PASA_asmbl_29039: 73330-73553
cDNA
(Sanger)
(ID:Location)		 017_E01.ab1: 74700-75973

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_070 0.0 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
2 Hb_002960_040 0.0965512625 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
3 Hb_021409_190 0.1137660446 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
4 Hb_010984_010 0.1157582402 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000803_240 0.1287903541 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
6 Hb_000803_220 0.1318630126 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
7 Hb_008616_040 0.1341813322 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
8 Hb_000976_130 0.1351906608 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
9 Hb_007894_190 0.137540845 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
10 Hb_028707_110 0.139058458 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
11 Hb_004055_160 0.1409076413 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
12 Hb_014361_110 0.1413055072 - - RNA binding protein, putative [Ricinus communis]
13 Hb_003077_130 0.1459117987 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
14 Hb_001109_160 0.1460646383 - - DNA binding protein, putative [Ricinus communis]
15 Hb_001250_020 0.1461787411 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
16 Hb_005618_150 0.1467074755 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
17 Hb_018043_020 0.1495099005 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
18 Hb_002217_140 0.1507720674 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
19 Hb_001907_080 0.1510162096 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
20 Hb_166127_030 0.1524293064 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002783_070 Hb_002783_070 Hb_002960_040 Hb_002960_040 Hb_002783_070--Hb_002960_040 Hb_021409_190 Hb_021409_190 Hb_002783_070--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_002783_070--Hb_010984_010 Hb_000803_240 Hb_000803_240 Hb_002783_070--Hb_000803_240 Hb_000803_220 Hb_000803_220 Hb_002783_070--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_002783_070--Hb_008616_040 Hb_000976_130 Hb_000976_130 Hb_002960_040--Hb_000976_130 Hb_000966_040 Hb_000966_040 Hb_002960_040--Hb_000966_040 Hb_001907_080 Hb_001907_080 Hb_002960_040--Hb_001907_080 Hb_009692_040 Hb_009692_040 Hb_002960_040--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_002960_040--Hb_000193_220 Hb_021409_190--Hb_008616_040 Hb_000640_260 Hb_000640_260 Hb_021409_190--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_021409_190--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_021409_190--Hb_018043_020 Hb_001109_160 Hb_001109_160 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_010984_010--Hb_000803_220 Hb_010984_010--Hb_008616_040 Hb_010984_010--Hb_000803_240 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010 Hb_001723_030 Hb_001723_030 Hb_000803_240--Hb_001723_030 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_000803_220--Hb_007576_180 Hb_164926_010 Hb_164926_010 Hb_000803_220--Hb_164926_010 Hb_000803_220--Hb_000803_240 Hb_001425_010 Hb_001425_010 Hb_000803_220--Hb_001425_010 Hb_000803_220--Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_008616_040--Hb_001250_020 Hb_008616_040--Hb_003029_140 Hb_008616_040--Hb_000976_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.8579 70.7142 228.363 120.518 105.119 51.3554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4357 13.8465 42.5767 106.192 584.003

CAGE analysis