Hb_002783_150

Information

Type -
Description -
Location Contig2783: 171992-172510
Sequence    

Annotation

kegg
ID rcu:RCOM_1598170
description cyclophilin, putative (EC:5.2.1.8)
nr
ID ABZ88806.1
description cyclophilin [Hevea brasiliensis]
swissprot
ID Q39613
description Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=1 SV=1
trembl
ID B3FNQ1
description Peptidyl-prolyl cis-trans isomerase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005774
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_150 0.0 - - cyclophilin [Hevea brasiliensis]
2 Hb_007904_040 0.1357167397 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
3 Hb_009615_180 0.1569484724 - - lipoic acid synthetase, putative [Ricinus communis]
4 Hb_000032_400 0.1587334679 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
5 Hb_000500_050 0.1661018862 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
6 Hb_004672_020 0.166260941 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
7 Hb_002085_080 0.1676610339 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Jatropha curcas]
8 Hb_002527_040 0.1767493309 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
9 Hb_000560_040 0.1799653795 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_001842_020 0.1805773616 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
11 Hb_000086_390 0.180671779 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
12 Hb_001343_020 0.1811529789 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_005305_020 0.1813405016 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
14 Hb_002529_090 0.1815600707 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
15 Hb_001898_180 0.1819517161 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
16 Hb_003910_050 0.1828041472 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
17 Hb_000175_050 0.1833421595 - - -
18 Hb_000834_080 0.1858302587 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
19 Hb_001373_130 0.1884686866 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000032_140 0.1890228727 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002783_150 Hb_002783_150 Hb_007904_040 Hb_007904_040 Hb_002783_150--Hb_007904_040 Hb_009615_180 Hb_009615_180 Hb_002783_150--Hb_009615_180 Hb_000032_400 Hb_000032_400 Hb_002783_150--Hb_000032_400 Hb_000500_050 Hb_000500_050 Hb_002783_150--Hb_000500_050 Hb_004672_020 Hb_004672_020 Hb_002783_150--Hb_004672_020 Hb_002085_080 Hb_002085_080 Hb_002783_150--Hb_002085_080 Hb_000175_050 Hb_000175_050 Hb_007904_040--Hb_000175_050 Hb_000032_140 Hb_000032_140 Hb_007904_040--Hb_000032_140 Hb_001842_020 Hb_001842_020 Hb_007904_040--Hb_001842_020 Hb_007904_040--Hb_004672_020 Hb_007904_040--Hb_000032_400 Hb_003226_190 Hb_003226_190 Hb_009615_180--Hb_003226_190 Hb_000184_030 Hb_000184_030 Hb_009615_180--Hb_000184_030 Hb_001294_030 Hb_001294_030 Hb_009615_180--Hb_001294_030 Hb_126917_010 Hb_126917_010 Hb_009615_180--Hb_126917_010 Hb_000352_220 Hb_000352_220 Hb_009615_180--Hb_000352_220 Hb_011053_030 Hb_011053_030 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000032_400--Hb_000175_050 Hb_003124_110 Hb_003124_110 Hb_000500_050--Hb_003124_110 Hb_000191_080 Hb_000191_080 Hb_000500_050--Hb_000191_080 Hb_000500_050--Hb_000032_400 Hb_001373_130 Hb_001373_130 Hb_000500_050--Hb_001373_130 Hb_000140_270 Hb_000140_270 Hb_000500_050--Hb_000140_270 Hb_005305_020 Hb_005305_020 Hb_004672_020--Hb_005305_020 Hb_001307_100 Hb_001307_100 Hb_004672_020--Hb_001307_100 Hb_004041_030 Hb_004041_030 Hb_004672_020--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_004672_020--Hb_002150_020 Hb_032631_070 Hb_032631_070 Hb_004672_020--Hb_032631_070 Hb_004672_020--Hb_000175_050 Hb_003207_030 Hb_003207_030 Hb_002085_080--Hb_003207_030 Hb_002085_080--Hb_126917_010 Hb_003171_030 Hb_003171_030 Hb_002085_080--Hb_003171_030 Hb_000264_280 Hb_000264_280 Hb_002085_080--Hb_000264_280 Hb_000976_130 Hb_000976_130 Hb_002085_080--Hb_000976_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55909 47.125 38.4824 47.8451 8.77755 3.27675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7597 48.7317 5.75925 25.7842 136.914

CAGE analysis