Hb_002783_170

Information

Type -
Description -
Location Contig2783: 183639-188453
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26150g
description POPTRDRAFT_818811; hypothetical protein
nr
ID XP_012073791.1
description PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
swissprot
ID Q6GPL9
description BRCA1-A complex subunit BRE OS=Xenopus laevis GN=bre PE=2 SV=1
trembl
ID A0A067KLA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08208 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29051: 187865-188363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_170 0.0 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
2 Hb_000414_050 0.0519957456 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
3 Hb_000776_100 0.0679063685 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
4 Hb_002836_140 0.0711152601 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
5 Hb_000915_080 0.0716126588 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
6 Hb_007951_040 0.0728951652 - - signal peptidase family protein [Populus trichocarpa]
7 Hb_000101_380 0.0770452837 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
8 Hb_000751_030 0.0783002385 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
9 Hb_003038_120 0.07942687 - - rer1 protein, putative [Ricinus communis]
10 Hb_000392_230 0.0841286333 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001501_080 0.0854790931 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
12 Hb_001188_070 0.0854980001 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
13 Hb_000445_050 0.0857987054 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
14 Hb_001227_130 0.0892272964 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
15 Hb_143395_010 0.0893268995 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
16 Hb_003185_010 0.0893904674 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
17 Hb_002073_190 0.090803141 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
18 Hb_017700_010 0.0908878828 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
19 Hb_007416_300 0.0913480877 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
20 Hb_001205_250 0.0914252539 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_170 Hb_002783_170 Hb_000414_050 Hb_000414_050 Hb_002783_170--Hb_000414_050 Hb_000776_100 Hb_000776_100 Hb_002783_170--Hb_000776_100 Hb_002836_140 Hb_002836_140 Hb_002783_170--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_002783_170--Hb_000915_080 Hb_007951_040 Hb_007951_040 Hb_002783_170--Hb_007951_040 Hb_000101_380 Hb_000101_380 Hb_002783_170--Hb_000101_380 Hb_000414_050--Hb_000776_100 Hb_002042_030 Hb_002042_030 Hb_000414_050--Hb_002042_030 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130 Hb_000414_050--Hb_002836_140 Hb_000414_050--Hb_000915_080 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000776_100--Hb_000101_380 Hb_002836_140--Hb_007951_040 Hb_002836_140--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_002836_140--Hb_008556_030 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000915_080--Hb_000101_380 Hb_000915_080--Hb_002042_030 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_007951_040--Hb_003038_120 Hb_007951_040--Hb_000915_080 Hb_000101_380--Hb_000007_280 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91935 4.45374 11.1734 9.78606 12.1498 10.3663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95896 6.63056 4.24931 7.05897 4.49866

CAGE analysis