Hb_002783_190

Information

Type -
Description -
Location Contig2783: 195465-197679
Sequence    

Annotation

kegg
ID rcu:RCOM_1598030
description hypothetical protein
nr
ID XP_012073794.1
description PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R896
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1598030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29054: 195465-197516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_190 0.0 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
2 Hb_000025_540 0.08787281 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
3 Hb_138585_030 0.0886426486 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_002627_040 0.0976020514 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
5 Hb_001279_020 0.1063942711 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
6 Hb_001279_090 0.1070701553 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
7 Hb_000620_020 0.107380769 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
8 Hb_000453_030 0.1111755129 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
9 Hb_000094_100 0.1115275783 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
10 Hb_004032_320 0.1132375593 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
11 Hb_000586_020 0.1143740591 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
12 Hb_010344_020 0.1151932689 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
13 Hb_001396_020 0.1158669398 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_000116_250 0.1165252252 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
15 Hb_021596_020 0.118545894 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
16 Hb_002684_020 0.118596154 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_010620_050 0.1198173699 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
18 Hb_004705_160 0.1202382348 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
19 Hb_005062_060 0.120312918 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
20 Hb_001789_160 0.1207476847 - - PREDICTED: putative transporter arsB [Jatropha curcas]

Gene co-expression network

sample Hb_002783_190 Hb_002783_190 Hb_000025_540 Hb_000025_540 Hb_002783_190--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002783_190--Hb_138585_030 Hb_002627_040 Hb_002627_040 Hb_002783_190--Hb_002627_040 Hb_001279_020 Hb_001279_020 Hb_002783_190--Hb_001279_020 Hb_001279_090 Hb_001279_090 Hb_002783_190--Hb_001279_090 Hb_000620_020 Hb_000620_020 Hb_002783_190--Hb_000620_020 Hb_003994_080 Hb_003994_080 Hb_000025_540--Hb_003994_080 Hb_000025_540--Hb_138585_030 Hb_000025_540--Hb_002627_040 Hb_014497_010 Hb_014497_010 Hb_000025_540--Hb_014497_010 Hb_002687_160 Hb_002687_160 Hb_000025_540--Hb_002687_160 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002627_040--Hb_002687_160 Hb_002627_040--Hb_138585_030 Hb_070624_010 Hb_070624_010 Hb_002627_040--Hb_070624_010 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_020--Hb_001279_090 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_001279_090--Hb_001053_080 Hb_000808_210 Hb_000808_210 Hb_001279_090--Hb_000808_210 Hb_000302_190 Hb_000302_190 Hb_001279_090--Hb_000302_190 Hb_000358_210 Hb_000358_210 Hb_001279_090--Hb_000358_210 Hb_001279_090--Hb_070624_010 Hb_002871_040 Hb_002871_040 Hb_000620_020--Hb_002871_040 Hb_001102_070 Hb_001102_070 Hb_000620_020--Hb_001102_070 Hb_101334_020 Hb_101334_020 Hb_000620_020--Hb_101334_020 Hb_006438_020 Hb_006438_020 Hb_000620_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_000620_020--Hb_007426_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47786 7.79578 21.4713 12.0885 4.20693 4.6896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38442 3.16089 7.37522 7.71164 17.3292

CAGE analysis