Hb_002783_230

Information

Type -
Description -
Location Contig2783: 207952-211053
Sequence    

Annotation

kegg
ID tcc:TCM_034226
description Plant neutral invertase family protein
nr
ID AFH77952.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q9SW48
description Probable alkaline/neutral invertase B OS=Arabidopsis thaliana GN=INVB PE=1 SV=1
trembl
ID I0CL52
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV2 PE=2 SV=1
Gene Ontology
ID GO:0005829
description alkaline neutral invertase cinv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_230 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_000714_020 0.1053151284 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
3 Hb_011930_010 0.110341672 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
4 Hb_000481_010 0.1115922774 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
5 Hb_001514_020 0.1119249792 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
6 Hb_005031_070 0.1119408028 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
7 Hb_024399_010 0.1137108966 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
8 Hb_000117_040 0.1154744393 - - 30S ribosomal protein S6A [Hevea brasiliensis]
9 Hb_000847_070 0.1171490865 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
10 Hb_002660_140 0.1188540915 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
11 Hb_000784_090 0.1193349218 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_002249_140 0.1200076418 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
13 Hb_001623_370 0.1210636243 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004813_010 0.1212276465 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000163_290 0.1220021175 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
16 Hb_003688_100 0.1223167945 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
17 Hb_001493_100 0.1224670597 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
18 Hb_004223_230 0.1226139832 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_000038_130 0.1227121476 - - -
20 Hb_001956_050 0.1229536826 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002783_230 Hb_002783_230 Hb_000714_020 Hb_000714_020 Hb_002783_230--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_002783_230--Hb_011930_010 Hb_000481_010 Hb_000481_010 Hb_002783_230--Hb_000481_010 Hb_001514_020 Hb_001514_020 Hb_002783_230--Hb_001514_020 Hb_005031_070 Hb_005031_070 Hb_002783_230--Hb_005031_070 Hb_024399_010 Hb_024399_010 Hb_002783_230--Hb_024399_010 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_005147_110 Hb_005147_110 Hb_011930_010--Hb_005147_110 Hb_011930_010--Hb_024399_010 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020 Hb_000340_510 Hb_000340_510 Hb_000481_010--Hb_000340_510 Hb_000784_090 Hb_000784_090 Hb_000481_010--Hb_000784_090 Hb_002249_140 Hb_002249_140 Hb_000481_010--Hb_002249_140 Hb_002026_110 Hb_002026_110 Hb_000481_010--Hb_002026_110 Hb_002818_040 Hb_002818_040 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001514_020--Hb_001623_370 Hb_004223_230 Hb_004223_230 Hb_005031_070--Hb_004223_230 Hb_004012_010 Hb_004012_010 Hb_005031_070--Hb_004012_010 Hb_000339_070 Hb_000339_070 Hb_005031_070--Hb_000339_070 Hb_002918_280 Hb_002918_280 Hb_005031_070--Hb_002918_280 Hb_169246_010 Hb_169246_010 Hb_005031_070--Hb_169246_010 Hb_005314_010 Hb_005314_010 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_024399_010--Hb_000481_010 Hb_024399_010--Hb_002818_040 Hb_024399_010--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.769 4.3945 0.997915 1.20176 10.3433 7.63577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.21349 8.20873 5.04745 1.4709 0.200866

CAGE analysis