Hb_002783_240

Information

Type -
Description -
Location Contig2783: 214903-218866
Sequence    

Annotation

kegg
ID egr:104448844
description putative ER lumen protein-retaining receptor C28H8.4
nr
ID XP_012073800.1
description PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
swissprot
ID O44017
description ER lumen protein-retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1
trembl
ID A0A067KYI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08215 PE=4 SV=1
Gene Ontology
ID GO:0005783
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29059: 214958-218756 , PASA_asmbl_29060: 214958-218756 , PASA_asmbl_29061: 214980-218866
cDNA
(Sanger)
(ID:Location)		 020_F07.ab1: 214958-218387 , 042_A10.ab1: 214977-217817

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_240 0.0 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
2 Hb_007059_010 0.0601119002 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
3 Hb_103012_010 0.0618123127 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_005211_100 0.0701229858 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
5 Hb_040262_010 0.0714583003 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
6 Hb_001946_010 0.0729415874 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_000345_240 0.074804867 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
8 Hb_000120_060 0.0755913215 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
9 Hb_001960_020 0.0783534596 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
10 Hb_006827_020 0.0791711958 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000193_190 0.079253666 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
12 Hb_000617_100 0.0792586893 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
13 Hb_000260_170 0.0808904124 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
14 Hb_000260_330 0.0821726101 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
15 Hb_011930_160 0.0822054212 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
16 Hb_000700_140 0.0827586172 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
17 Hb_007317_110 0.0829655663 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
18 Hb_143629_110 0.0830234069 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
19 Hb_158062_010 0.0830885301 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
20 Hb_032202_200 0.0857499712 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002783_240 Hb_002783_240 Hb_007059_010 Hb_007059_010 Hb_002783_240--Hb_007059_010 Hb_103012_010 Hb_103012_010 Hb_002783_240--Hb_103012_010 Hb_005211_100 Hb_005211_100 Hb_002783_240--Hb_005211_100 Hb_040262_010 Hb_040262_010 Hb_002783_240--Hb_040262_010 Hb_001946_010 Hb_001946_010 Hb_002783_240--Hb_001946_010 Hb_000345_240 Hb_000345_240 Hb_002783_240--Hb_000345_240 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_103012_010--Hb_000538_100 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_005211_100--Hb_103012_010 Hb_000116_500 Hb_000116_500 Hb_005211_100--Hb_000116_500 Hb_001488_410 Hb_001488_410 Hb_005211_100--Hb_001488_410 Hb_000608_320 Hb_000608_320 Hb_005211_100--Hb_000608_320 Hb_004102_140 Hb_004102_140 Hb_005211_100--Hb_004102_140 Hb_002671_100 Hb_002671_100 Hb_040262_010--Hb_002671_100 Hb_040262_010--Hb_103012_010 Hb_040262_010--Hb_001946_010 Hb_040262_010--Hb_007317_110 Hb_040262_010--Hb_000260_170 Hb_007594_130 Hb_007594_130 Hb_040262_010--Hb_007594_130 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_011930_160 Hb_000193_190 Hb_000193_190 Hb_001946_010--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_000260_330 Hb_000260_330 Hb_000345_240--Hb_000260_330 Hb_000120_670 Hb_000120_670 Hb_000345_240--Hb_000120_670 Hb_003964_070 Hb_003964_070 Hb_000345_240--Hb_003964_070 Hb_003750_050 Hb_003750_050 Hb_000345_240--Hb_003750_050 Hb_000617_180 Hb_000617_180 Hb_000345_240--Hb_000617_180 Hb_004414_060 Hb_004414_060 Hb_000345_240--Hb_004414_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.468 14.2421 13.9246 25.9163 35.1562 28.9208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1441 17.0012 17.9542 25.3542 10.4408

CAGE analysis