Hb_002783_260

Information

Type -
Description -
Location Contig2783: 228510-235164
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26000g
description POPTRDRAFT_559830; hypothetical protein
nr
ID KDP36928.1
description hypothetical protein JCGZ_08219 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29063: 228402-234906 , PASA_asmbl_29064: 233555-233734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_260 0.0 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
2 Hb_011673_030 0.0742615643 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
3 Hb_001507_020 0.0858938846 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
4 Hb_000538_200 0.0860074657 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
5 Hb_003938_080 0.0897791024 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
6 Hb_001245_070 0.0903318672 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
7 Hb_001736_040 0.0930671353 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
8 Hb_004724_060 0.0935861573 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
9 Hb_011316_050 0.0952808306 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
10 Hb_004048_090 0.096014366 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
11 Hb_001545_120 0.0972973756 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
12 Hb_000317_020 0.0982232409 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
13 Hb_003057_110 0.0984959244 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
14 Hb_000577_010 0.0987283368 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
15 Hb_000661_050 0.0987928104 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
16 Hb_001009_310 0.0993541405 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
17 Hb_007586_030 0.1001752573 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_007757_110 0.1005545645 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_003464_060 0.101196167 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
20 Hb_001019_230 0.101441647 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_260 Hb_002783_260 Hb_011673_030 Hb_011673_030 Hb_002783_260--Hb_011673_030 Hb_001507_020 Hb_001507_020 Hb_002783_260--Hb_001507_020 Hb_000538_200 Hb_000538_200 Hb_002783_260--Hb_000538_200 Hb_003938_080 Hb_003938_080 Hb_002783_260--Hb_003938_080 Hb_001245_070 Hb_001245_070 Hb_002783_260--Hb_001245_070 Hb_001736_040 Hb_001736_040 Hb_002783_260--Hb_001736_040 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010 Hb_001975_160 Hb_001975_160 Hb_001507_020--Hb_001975_160 Hb_002678_020 Hb_002678_020 Hb_001507_020--Hb_002678_020 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_001584_150 Hb_001584_150 Hb_001507_020--Hb_001584_150 Hb_001507_020--Hb_003464_060 Hb_007757_110 Hb_007757_110 Hb_001507_020--Hb_007757_110 Hb_004600_040 Hb_004600_040 Hb_000538_200--Hb_004600_040 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_000538_200--Hb_000815_210 Hb_000538_200--Hb_001736_040 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260 Hb_009411_010 Hb_009411_010 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003544_100 Hb_003544_100 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_124315_020 Hb_124315_020 Hb_001245_070--Hb_124315_020 Hb_000661_050 Hb_000661_050 Hb_001245_070--Hb_000661_050 Hb_175338_030 Hb_175338_030 Hb_001245_070--Hb_175338_030 Hb_000453_170 Hb_000453_170 Hb_001245_070--Hb_000453_170 Hb_000392_300 Hb_000392_300 Hb_001245_070--Hb_000392_300 Hb_000244_250 Hb_000244_250 Hb_001245_070--Hb_000244_250 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_000317_020 Hb_000317_020 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4329 16.444 6.27572 4.51133 23.0912 29.1927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.003 18.1113 24.7233 8.11435 17.1313

CAGE analysis