Hb_002783_270

Information

Type -
Description -
Location Contig2783: 235264-238555
Sequence    

Annotation

kegg
ID fve:101307955
description AP-2 complex subunit sigma-like
nr
ID XP_004291364.1
description PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
swissprot
ID Q84WL9
description AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2 SV=1
trembl
ID A0A068UFZ7
description Coffea canephora DH200=94 genomic scaffold, scaffold_26 OS=Coffea canephora GN=GSCOC_T00024657001 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ap-2 complex subunit sigma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29065: 237000-238375 , PASA_asmbl_29066: 235152-238459 , PASA_asmbl_29067: 235359-238323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_270 0.0 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
2 Hb_007044_130 0.0560786435 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
3 Hb_000046_560 0.0724521502 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
4 Hb_006925_040 0.0738542219 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
5 Hb_003894_070 0.0772471607 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
6 Hb_003058_080 0.0790267181 - - Chaperonin 10 isoform 1 [Theobroma cacao]
7 Hb_001341_090 0.0814587307 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
8 Hb_134949_020 0.085317543 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
9 Hb_002900_160 0.0865959245 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
10 Hb_001141_140 0.0867683211 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
11 Hb_003185_110 0.0934648802 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
12 Hb_003683_110 0.0935323369 - - JHL10I11.3 [Jatropha curcas]
13 Hb_003018_010 0.0938351803 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
14 Hb_000260_550 0.0957135459 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_000996_140 0.0961364866 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
16 Hb_002768_030 0.0964965883 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_014720_040 0.0974493467 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
18 Hb_000699_160 0.0980180577 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
19 Hb_002811_260 0.1009795597 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
20 Hb_003018_020 0.1027683976 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_270 Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_002783_270--Hb_007044_130 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_006925_040 Hb_006925_040 Hb_002783_270--Hb_006925_040 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_007044_130--Hb_003894_070 Hb_007044_130--Hb_006925_040 Hb_000046_560--Hb_006925_040 Hb_003683_110 Hb_003683_110 Hb_000046_560--Hb_003683_110 Hb_000996_140 Hb_000996_140 Hb_000046_560--Hb_000996_140 Hb_000046_560--Hb_007044_130 Hb_004157_030 Hb_004157_030 Hb_000046_560--Hb_004157_030 Hb_006925_040--Hb_001141_140 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_006925_040--Hb_000996_140 Hb_014720_040 Hb_014720_040 Hb_003894_070--Hb_014720_040 Hb_003894_070--Hb_001341_090 Hb_005045_060 Hb_005045_060 Hb_003894_070--Hb_005045_060 Hb_000836_470 Hb_000836_470 Hb_003894_070--Hb_000836_470 Hb_003058_080--Hb_007044_130 Hb_004052_020 Hb_004052_020 Hb_003058_080--Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_003058_080--Hb_012753_230 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_001341_090--Hb_005045_060 Hb_134949_020 Hb_134949_020 Hb_001341_090--Hb_134949_020 Hb_001341_090--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_002343_060 Hb_002343_060 Hb_001341_090--Hb_002343_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.7046 15.4163 59.2743 44.6447 41.5181 41.7893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.6371 143.279 39.1297 17.3585 18.6065

CAGE analysis