Hb_002783_280

Information

Type -
Description -
Location Contig2783: 241278-242548
Sequence    

Annotation

kegg
ID rcu:RCOM_1597790
description hypothetical protein
nr
ID XP_012073809.1
description PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
swissprot
ID F4I0N3
description WEB family protein At1g75720 OS=Arabidopsis thaliana GN=At1g75720 PE=2 SV=1
trembl
ID A0A067KL03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29069: 241277-242429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_280 0.0 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
2 Hb_000317_380 0.0898459683 - - Peroxidase 47 precursor, putative [Ricinus communis]
3 Hb_006002_050 0.1015415791 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
4 Hb_007122_020 0.1127578432 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_000140_320 0.1184440192 - - delta-8 sphingolipid desaturase [Vernicia fordii]
6 Hb_162472_010 0.1188749536 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000413_120 0.1234459071 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
8 Hb_001898_040 0.1247230394 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_004020_030 0.1250471405 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
10 Hb_000866_130 0.1253263769 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
11 Hb_000724_060 0.1254001222 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
12 Hb_003893_180 0.1266158697 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
13 Hb_006153_140 0.1272350205 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
14 Hb_000011_280 0.1277657122 - - pectinesterase family protein [Populus trichocarpa]
15 Hb_000964_040 0.1280688081 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
16 Hb_002783_100 0.1280800142 - - Zeamatin precursor, putative [Ricinus communis]
17 Hb_001818_010 0.1283038394 - - Disease resistance response protein, putative [Ricinus communis]
18 Hb_009079_020 0.128566498 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
19 Hb_015175_070 0.1288645851 - - cysteine protease, putative [Ricinus communis]
20 Hb_001975_110 0.1297440831 - - -

Gene co-expression network

sample Hb_002783_280 Hb_002783_280 Hb_000317_380 Hb_000317_380 Hb_002783_280--Hb_000317_380 Hb_006002_050 Hb_006002_050 Hb_002783_280--Hb_006002_050 Hb_007122_020 Hb_007122_020 Hb_002783_280--Hb_007122_020 Hb_000140_320 Hb_000140_320 Hb_002783_280--Hb_000140_320 Hb_162472_010 Hb_162472_010 Hb_002783_280--Hb_162472_010 Hb_000413_120 Hb_000413_120 Hb_002783_280--Hb_000413_120 Hb_002783_100 Hb_002783_100 Hb_000317_380--Hb_002783_100 Hb_002092_060 Hb_002092_060 Hb_000317_380--Hb_002092_060 Hb_001975_110 Hb_001975_110 Hb_000317_380--Hb_001975_110 Hb_002309_020 Hb_002309_020 Hb_000317_380--Hb_002309_020 Hb_015175_070 Hb_015175_070 Hb_000317_380--Hb_015175_070 Hb_000005_290 Hb_000005_290 Hb_000317_380--Hb_000005_290 Hb_000011_280 Hb_000011_280 Hb_006002_050--Hb_000011_280 Hb_000997_080 Hb_000997_080 Hb_006002_050--Hb_000997_080 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_000964_040 Hb_000964_040 Hb_007122_020--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_007122_020--Hb_150299_010 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_000103_450 Hb_000103_450 Hb_000140_320--Hb_000103_450 Hb_010883_170 Hb_010883_170 Hb_000140_320--Hb_010883_170 Hb_001047_090 Hb_001047_090 Hb_000140_320--Hb_001047_090 Hb_002311_030 Hb_002311_030 Hb_000140_320--Hb_002311_030 Hb_006922_120 Hb_006922_120 Hb_000140_320--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_000140_320--Hb_053264_010 Hb_001025_130 Hb_001025_130 Hb_162472_010--Hb_001025_130 Hb_162472_010--Hb_001975_110 Hb_002276_080 Hb_002276_080 Hb_162472_010--Hb_002276_080 Hb_006483_070 Hb_006483_070 Hb_162472_010--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_162472_010--Hb_001709_120 Hb_162472_010--Hb_000005_290 Hb_002228_120 Hb_002228_120 Hb_000413_120--Hb_002228_120 Hb_004933_010 Hb_004933_010 Hb_000413_120--Hb_004933_010 Hb_015292_020 Hb_015292_020 Hb_000413_120--Hb_015292_020 Hb_140627_040 Hb_140627_040 Hb_000413_120--Hb_140627_040 Hb_000333_140 Hb_000333_140 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.35002 7.1018 24.2519 0.170891 0.16317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0667118 0.26228 0.379851 0.339613 6.11261

CAGE analysis