Hb_002783_300

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2783: 250809-252880
Sequence    

Annotation

kegg
ID rcu:RCOM_1597570
description nucleic acid binding protein, putative
nr
ID XP_002510523.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R880
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1597570 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29070: 250974-252763 , PASA_asmbl_29071: 250856-252698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_300 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000343_260 0.0851006652 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
3 Hb_000579_220 0.0992996051 - - transcription factor, putative [Ricinus communis]
4 Hb_009778_030 0.1079894267 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
5 Hb_000172_010 0.1192304415 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
6 Hb_000146_110 0.1237960679 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
7 Hb_000521_290 0.1240476908 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
8 Hb_007237_090 0.1279313074 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000668_160 0.1279578716 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
10 Hb_006198_060 0.1345358939 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
11 Hb_002219_090 0.1347212165 - - protein kinase atmrk1, putative [Ricinus communis]
12 Hb_006615_190 0.1361309679 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
13 Hb_149056_010 0.1377816779 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
14 Hb_001009_110 0.1380539605 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
15 Hb_000123_310 0.1399805129 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
16 Hb_010962_030 0.1414972145 - - kinase, putative [Ricinus communis]
17 Hb_001879_050 0.1435567331 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_010921_060 0.1436871793 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000819_010 0.144156087 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
20 Hb_084127_010 0.1486284238 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002783_300 Hb_002783_300 Hb_000343_260 Hb_000343_260 Hb_002783_300--Hb_000343_260 Hb_000579_220 Hb_000579_220 Hb_002783_300--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_002783_300--Hb_009778_030 Hb_000172_010 Hb_000172_010 Hb_002783_300--Hb_000172_010 Hb_000146_110 Hb_000146_110 Hb_002783_300--Hb_000146_110 Hb_000521_290 Hb_000521_290 Hb_002783_300--Hb_000521_290 Hb_000343_260--Hb_000521_290 Hb_007709_010 Hb_007709_010 Hb_000343_260--Hb_007709_010 Hb_000668_160 Hb_000668_160 Hb_000343_260--Hb_000668_160 Hb_152718_010 Hb_152718_010 Hb_000343_260--Hb_152718_010 Hb_107543_010 Hb_107543_010 Hb_000343_260--Hb_107543_010 Hb_007237_090 Hb_007237_090 Hb_000579_220--Hb_007237_090 Hb_084127_010 Hb_084127_010 Hb_000579_220--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_000579_220--Hb_006615_190 Hb_000579_220--Hb_000172_010 Hb_020648_020 Hb_020648_020 Hb_000579_220--Hb_020648_020 Hb_000521_210 Hb_000521_210 Hb_000579_220--Hb_000521_210 Hb_009778_030--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_009778_030--Hb_000003_620 Hb_002890_060 Hb_002890_060 Hb_009778_030--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_009778_030--Hb_000111_130 Hb_000123_310 Hb_000123_310 Hb_009778_030--Hb_000123_310 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_000172_010--Hb_006615_190 Hb_000172_010--Hb_007237_090 Hb_001879_050 Hb_001879_050 Hb_000172_010--Hb_001879_050 Hb_000072_160 Hb_000072_160 Hb_000172_010--Hb_000072_160 Hb_000172_010--Hb_084127_010 Hb_000146_110--Hb_000003_620 Hb_000146_110--Hb_002890_060 Hb_000146_110--Hb_000111_130 Hb_000146_110--Hb_000123_310 Hb_007371_020 Hb_007371_020 Hb_000146_110--Hb_007371_020 Hb_002085_070 Hb_002085_070 Hb_000521_290--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_000521_290--Hb_000002_100 Hb_000521_290--Hb_020648_020 Hb_010921_060 Hb_010921_060 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_001514_100 Hb_001514_100 Hb_000521_290--Hb_001514_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96764 85.5586 6.19094 13.3524 0.224004 0.282366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.41401 0.0465316 0 28.8265 14.045

CAGE analysis