Hb_002783_310

Information

Type -
Description -
Location Contig2783: 255750-261110
Sequence    

Annotation

kegg
ID rcu:RCOM_1597560
description translation initiation factor, putative
nr
ID XP_012073811.1
description PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
swissprot
ID Q54UB1
description tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1
trembl
ID A0A067KYJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08225 PE=4 SV=1
Gene Ontology
ID GO:0031515
description trna (adenine -n )-methyltransferase non-catalytic subunit trm6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29072: 256276-261093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_310 0.0 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
2 Hb_000771_180 0.0474148176 - - polypyrimidine tract binding protein, putative [Ricinus communis]
3 Hb_050847_020 0.0520623108 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_007520_030 0.0612840967 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
5 Hb_000334_270 0.0682416937 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_000664_070 0.0692606548 - - PREDICTED: protein cereblon [Jatropha curcas]
7 Hb_000046_010 0.071335186 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
8 Hb_002835_230 0.0715848316 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_031527_020 0.0748491397 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
10 Hb_017491_030 0.0754456506 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
11 Hb_131646_010 0.0772803879 - - protein arginine n-methyltransferase, putative [Ricinus communis]
12 Hb_000594_040 0.0785839774 - - hypothetical protein L484_013922 [Morus notabilis]
13 Hb_001486_340 0.0788288718 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
14 Hb_006355_010 0.0806573403 - - PREDICTED: protein NLRC3 [Jatropha curcas]
15 Hb_001718_090 0.0811593981 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
16 Hb_002686_250 0.0819596631 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
17 Hb_008159_020 0.0820019447 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_001454_280 0.0820889273 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
19 Hb_002163_010 0.0823578505 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
20 Hb_000059_140 0.0827995586 - - rnase h, putative [Ricinus communis]

Gene co-expression network

sample Hb_002783_310 Hb_002783_310 Hb_000771_180 Hb_000771_180 Hb_002783_310--Hb_000771_180 Hb_050847_020 Hb_050847_020 Hb_002783_310--Hb_050847_020 Hb_007520_030 Hb_007520_030 Hb_002783_310--Hb_007520_030 Hb_000334_270 Hb_000334_270 Hb_002783_310--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_002783_310--Hb_000664_070 Hb_000046_010 Hb_000046_010 Hb_002783_310--Hb_000046_010 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000771_180--Hb_000334_270 Hb_000771_180--Hb_000664_070 Hb_002045_150 Hb_002045_150 Hb_050847_020--Hb_002045_150 Hb_011386_040 Hb_011386_040 Hb_050847_020--Hb_011386_040 Hb_050847_020--Hb_140049_030 Hb_000136_090 Hb_000136_090 Hb_050847_020--Hb_000136_090 Hb_000059_140 Hb_000059_140 Hb_007520_030--Hb_000059_140 Hb_008406_110 Hb_008406_110 Hb_007520_030--Hb_008406_110 Hb_001172_010 Hb_001172_010 Hb_007520_030--Hb_001172_010 Hb_007520_030--Hb_000771_180 Hb_001502_060 Hb_001502_060 Hb_007520_030--Hb_001502_060 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000594_040 Hb_000594_040 Hb_000664_070--Hb_000594_040 Hb_008147_040 Hb_008147_040 Hb_000664_070--Hb_008147_040 Hb_000640_310 Hb_000640_310 Hb_000664_070--Hb_000640_310 Hb_000664_070--Hb_000160_350 Hb_001718_090 Hb_001718_090 Hb_000046_010--Hb_001718_090 Hb_000441_070 Hb_000441_070 Hb_000046_010--Hb_000441_070 Hb_000025_360 Hb_000025_360 Hb_000046_010--Hb_000025_360 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7288 10.3005 6.22483 5.08471 13.0175 9.87596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.85432 7.74754 4.96377 8.35218 3.69982

CAGE analysis